Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27941 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48491 * 109.47308 * 270.00114 * 3 2 1 5 5 H 1.48507 * 109.46909 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.47141 * 149.99951 * 3 2 1 7 7 C 1.50706 * 120.00023 * 180.02562 * 2 1 3 8 8 C 1.55187 * 110.53125 * 19.87761 * 7 2 1 9 9 C 1.55381 * 101.81724 * 209.68448 * 8 7 2 10 10 H 1.09003 * 110.75896 * 157.73574 * 9 8 7 11 11 C 1.50700 * 110.62625 * 280.67669 * 9 8 7 12 12 N 1.34776 * 120.00469 * 275.49290 * 11 9 8 13 13 O 1.21283 * 119.99698 * 95.49694 * 11 9 8 14 14 N 1.46368 * 103.46216 * 39.17640 * 9 8 7 15 15 N 1.40728 * 129.61069 * 143.00680 * 14 9 8 16 16 C 1.31216 * 115.98184 * 216.45675 * 15 14 9 17 17 C 1.46605 * 120.07134 * 2.07476 * 16 15 14 18 18 C 1.33469 * 122.05570 * 342.34428 * 17 16 15 19 19 C 1.47827 * 108.46676 * 327.89625 * 14 9 8 20 20 H 1.09005 * 110.50372 * 251.48796 * 19 14 9 21 21 H 0.97000 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.08998 * 110.47737 * 142.69262 * 7 2 1 23 23 H 1.08999 * 110.96172 * 327.82051 * 8 7 2 24 24 H 1.09001 * 110.95299 * 91.55356 * 8 7 2 25 25 H 0.96997 * 119.99926 * 0.02562 * 12 11 9 26 26 H 0.96999 * 120.00082 * 179.97438 * 12 11 9 27 27 H 1.08002 * 119.96152 * 182.04930 * 16 15 14 28 28 H 1.08007 * 118.97365 * 162.37332 * 17 16 15 29 29 H 1.08000 * 120.69968 * 180.28094 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 2.4609 2.0464 -1.4000 5 1 1.4108 2.6527 0.7001 6 1 3.5110 1.4401 0.7001 7 6 2.0329 -1.3052 -0.0006 8 6 1.1215 -2.4596 -0.4952 9 6 1.7089 -3.6785 0.2688 10 1 0.9714 -4.4773 0.3472 11 6 2.9591 -4.1775 -0.4089 12 7 2.8680 -5.0383 -1.4419 13 8 4.0472 -3.8045 -0.0245 14 7 2.0214 -3.1336 1.5908 15 7 1.9073 -3.7338 2.8585 16 6 1.5316 -2.9440 3.8368 17 6 1.2149 -1.5385 3.5657 18 6 1.6111 -0.9258 2.4481 19 6 2.4035 -1.7142 1.4339 20 1 3.4727 -1.5857 1.6025 21 1 -0.4850 0.8401 -0.0004 22 1 2.9270 -1.2290 -0.6194 23 1 0.0834 -2.2854 -0.2123 24 1 1.2130 -2.5940 -1.5731 25 1 1.9977 -5.3364 -1.7495 26 1 3.6727 -5.3591 -1.8782 27 1 1.4553 -3.3300 4.8426 28 1 0.6435 -0.9812 4.2934 29 1 1.3692 0.1120 2.2729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307312706.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = 68.075342 kcal Electronic energy + Delta-G solvation = -15748.287522 eV Core-core repulsion = 13174.408637 eV Total energy + Delta-G solvation = -2573.878885 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.66261 -39.67045 -37.52360 -35.53984 -34.59439 -33.47032 -30.42627 -29.98889 -24.77522 -24.43899 -24.17669 -21.54706 -20.37358 -19.19346 -18.18406 -17.88051 -17.50560 -17.14058 -16.93248 -16.02336 -15.82468 -14.95773 -14.87702 -14.59217 -14.15379 -14.01272 -13.74203 -13.04104 -12.96399 -12.72391 -12.43228 -12.09693 -12.01178 -11.49814 -11.34822 -11.00135 -10.63921 -10.34026 -9.88340 -8.67290 0.21400 0.74561 1.02386 1.38479 1.41428 1.66331 1.71251 1.86949 1.89913 2.63421 3.25548 3.47318 3.60563 3.74717 3.86842 4.00882 4.02426 4.14224 4.37840 4.46692 4.65797 4.75934 4.83054 4.92849 5.13939 5.24828 5.27941 5.43525 5.86679 5.99210 6.47766 6.86934 7.13741 7.36161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.243 1.243 5 H -0.242 1.242 6 H -0.241 1.241 7 C -0.069 4.069 8 C -0.099 4.099 9 C 0.153 3.847 10 H 0.118 0.882 11 C 0.504 3.496 12 N -0.835 5.835 13 O -0.579 6.579 14 N -0.545 5.545 15 N -0.231 5.231 16 C 0.063 3.937 17 C -0.157 4.157 18 C -0.144 4.144 19 C 0.166 3.834 20 H 0.062 0.938 21 H 0.348 0.652 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.418 0.582 26 H 0.407 0.593 27 H 0.201 0.799 28 H 0.151 0.849 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 1.866 -2.591 5.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.245 5.245 2 C -0.240 4.240 3 Si 0.766 3.234 4 H -0.166 1.166 5 H -0.164 1.164 6 H -0.163 1.163 7 C -0.090 4.090 8 C -0.138 4.138 9 C 0.044 3.956 10 H 0.135 0.865 11 C 0.287 3.713 12 N -0.400 5.400 13 O -0.457 6.457 14 N -0.359 5.359 15 N -0.033 5.033 16 C -0.144 4.144 17 C -0.178 4.178 18 C -0.170 4.170 19 C 0.059 3.941 20 H 0.080 0.920 21 H 0.166 0.834 22 H 0.129 0.871 23 H 0.124 0.876 24 H 0.129 0.871 25 H 0.250 0.750 26 H 0.238 0.762 27 H 0.218 0.782 28 H 0.169 0.831 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.419 1.120 -2.489 4.375 hybrid contribution -0.005 0.973 -0.024 0.974 sum -3.425 2.093 -2.513 4.735 Atomic orbital electron populations 1.68081 1.10059 1.37838 1.08541 1.29906 0.96724 1.04953 0.92387 0.85485 0.80955 0.74349 0.82567 1.16634 1.16433 1.16314 1.21413 0.99187 0.93092 0.95259 1.22976 1.00633 0.89418 1.00775 1.21471 0.93334 0.99351 0.81443 0.86452 1.21462 0.91366 0.78403 0.80070 1.43747 1.13955 1.47640 1.34683 1.90721 1.30843 1.59191 1.64958 1.50710 1.75971 1.08921 1.00324 1.76467 1.11797 1.24919 0.90165 1.26087 0.94805 0.93265 1.00241 1.22252 1.02293 0.94490 0.98724 1.24233 0.99557 0.99847 0.93337 1.20733 0.97274 0.82241 0.93878 0.92037 0.83377 0.87121 0.87579 0.87145 0.75043 0.76167 0.78229 0.83131 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.63 1.19 12.19 24.11 0.29 1.48 15 2 C 0.01 -0.02 3.03 88.68 0.27 0.25 15 3 Si 0.95 -3.21 28.24 68.60 1.94 -1.27 15 4 H -0.24 0.50 7.11 99.48 0.71 1.21 15 5 H -0.24 0.82 7.11 99.48 0.71 1.52 15 6 H -0.24 0.28 7.11 99.48 0.71 0.99 15 7 C -0.07 -0.03 2.57 -10.55 -0.03 -0.05 15 8 C -0.10 0.17 5.90 32.16 0.19 0.36 15 9 C 0.15 0.36 3.96 45.09 0.18 0.54 15 10 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 15 11 C 0.50 2.39 7.10 87.66 0.62 3.02 15 12 N -0.84 3.38 8.87 -173.53 -1.54 1.84 15 13 O -0.58 -8.55 16.99 -3.04 -0.05 -8.60 15 14 N -0.55 -4.28 3.52 -470.43 -1.66 -5.94 15 15 N -0.23 -2.20 12.21 -52.10 -0.64 -2.83 15 16 C 0.06 0.22 11.51 86.97 1.00 1.22 15 17 C -0.16 -0.21 10.01 23.37 0.23 0.03 15 18 C -0.14 -0.32 8.65 24.68 0.21 -0.11 15 19 C 0.17 0.89 3.30 44.30 0.15 1.04 15 20 H 0.06 0.59 8.14 -2.38 -0.02 0.57 15 21 H 0.35 -1.73 8.23 -92.71 -0.76 -2.49 15 22 H 0.11 -0.05 7.93 -2.39 -0.02 -0.07 15 23 H 0.11 -0.04 6.96 -2.39 -0.02 -0.06 15 24 H 0.11 -0.69 8.07 -2.39 -0.02 -0.71 15 25 H 0.42 -4.55 8.83 -92.71 -0.82 -5.37 15 26 H 0.41 -1.95 8.93 -92.71 -0.83 -2.78 15 27 H 0.20 -0.66 8.06 -2.91 -0.02 -0.69 15 28 H 0.15 -0.59 8.06 -2.91 -0.02 -0.61 15 29 H 0.14 -0.21 5.60 -2.91 -0.02 -0.23 15 Total: 0.00 -18.60 246.32 0.73 -17.87 By element: Atomic # 1 Polarization: -8.39 SS G_CDS: -0.45 Total: -8.84 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 2.83 Total: 6.29 kcal Atomic # 7 Polarization: -1.91 SS G_CDS: -3.54 Total: -5.45 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.05 Total: -8.60 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 1.94 Total: -1.27 kcal Total: -18.60 0.73 -17.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307312706.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.945 kcal (2) G-P(sol) polarization free energy of solvation -18.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds