Wall clock time and date at job start Mon Mar 30 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27944 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48504 * 109.46841 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47037 * 120.00194 * 3 2 1 6 6 H 1.48495 * 109.46982 * 240.00522 * 3 2 1 7 7 C 1.50692 * 120.00363 * 180.02562 * 2 1 3 8 8 C 1.55488 * 110.92133 * 331.82368 * 7 2 1 9 9 C 1.54956 * 101.93005 * 155.74893 * 8 7 2 10 10 H 1.08997 * 110.18316 * 208.77381 * 9 8 7 11 11 C 1.50697 * 110.18276 * 86.94360 * 9 8 7 12 12 N 1.34780 * 119.99955 * 80.00486 * 11 9 8 13 13 O 1.21279 * 120.00313 * 260.00099 * 11 9 8 14 14 N 1.46225 * 105.81400 * 327.85650 * 9 8 7 15 15 N 1.40472 * 128.82173 * 190.07330 * 14 9 8 16 16 C 1.31191 * 115.29047 * 217.75596 * 15 14 9 17 17 C 1.46629 * 120.12534 * 1.22954 * 16 15 14 18 18 C 1.33530 * 121.95025 * 341.93014 * 17 16 15 19 19 C 1.47928 * 109.47984 * 13.74993 * 14 9 8 20 20 H 1.09006 * 110.85878 * 250.32980 * 19 14 9 21 21 H 0.96997 * 119.99676 * 174.30296 * 1 2 3 22 22 H 1.08998 * 110.81573 * 208.15683 * 7 2 1 23 23 H 1.09005 * 110.94131 * 273.90388 * 8 7 2 24 24 H 1.08996 * 110.93963 * 37.55098 * 8 7 2 25 25 H 0.97001 * 120.00006 * 359.97438 * 12 11 9 26 26 H 0.96999 * 120.00210 * 180.02562 * 12 11 9 27 27 H 1.08004 * 119.93810 * 181.24638 * 16 15 14 28 28 H 1.07997 * 119.02468 * 161.95570 * 17 16 15 29 29 H 1.08003 * 120.77164 * 180.37108 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6178 0.0000 4 1 1.2483 2.7465 0.0006 5 1 3.0671 1.6965 1.2124 6 1 3.0670 1.6966 -1.2125 7 6 2.0330 -1.3050 -0.0006 8 6 1.2019 -2.4263 0.6847 9 6 1.7985 -3.7046 0.0434 10 1 1.0473 -4.4935 0.0085 11 6 3.0018 -4.1654 0.8250 12 7 2.8372 -4.8654 1.9649 13 8 4.1182 -3.9064 0.4283 14 7 2.1932 -3.3234 -1.3120 15 7 2.6060 -4.1461 -2.3731 16 6 3.5634 -3.6547 -3.1235 17 6 4.1441 -2.3449 -2.8116 18 6 3.5226 -1.4667 -2.0206 19 6 2.1883 -1.8490 -1.4310 20 1 1.3669 -1.5133 -2.0641 21 1 -0.4849 -0.8359 -0.0834 22 1 3.0046 -1.1914 0.4802 23 1 1.3578 -2.4227 1.7636 24 1 0.1431 -2.3277 0.4457 25 1 1.9443 -5.0723 2.2824 26 1 3.6116 -5.1617 2.4683 27 1 3.9244 -4.2159 -3.9728 28 1 5.1025 -2.0825 -3.2344 29 1 3.9651 -0.5047 -1.8083 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307312708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:02 Heat of formation + Delta-G solvation = 62.838672 kcal Electronic energy + Delta-G solvation = -15744.150192 eV Core-core repulsion = 13170.044227 eV Total energy + Delta-G solvation = -2574.105965 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.72714 -39.61223 -37.89078 -35.35384 -34.59207 -33.52239 -30.45124 -29.81878 -25.03000 -24.33874 -24.23384 -21.54002 -20.83597 -19.09439 -18.81899 -17.62091 -17.56586 -17.05040 -16.68406 -16.29890 -15.60862 -15.23707 -14.92620 -14.66059 -14.28419 -13.80013 -13.59185 -13.29578 -13.13370 -12.63866 -12.35072 -12.22717 -11.97522 -11.56872 -11.35704 -10.91545 -10.71266 -10.28844 -10.23105 -8.66205 0.27285 0.72212 1.12300 1.40281 1.56084 1.61658 1.75185 1.89581 1.99241 2.47773 3.07516 3.27958 3.44310 3.73079 3.82048 3.89863 3.93611 4.01534 4.20448 4.27943 4.38291 4.49778 4.61513 4.65376 4.98845 5.20665 5.26877 5.45926 5.72445 5.94650 6.28027 6.74660 7.13198 7.26410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.019 4.019 3 Si 1.059 2.941 4 H -0.243 1.243 5 H -0.245 1.245 6 H -0.242 1.242 7 C -0.125 4.125 8 C -0.117 4.117 9 C 0.161 3.839 10 H 0.104 0.896 11 C 0.496 3.504 12 N -0.855 5.855 13 O -0.525 6.525 14 N -0.536 5.536 15 N -0.192 5.192 16 C 0.072 3.928 17 C -0.142 4.142 18 C -0.143 4.143 19 C 0.168 3.832 20 H 0.081 0.919 21 H 0.325 0.675 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.402 0.598 26 H 0.402 0.598 27 H 0.174 0.826 28 H 0.130 0.870 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 0.606 2.097 2.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.265 4.265 3 Si 0.872 3.128 4 H -0.165 1.165 5 H -0.169 1.169 6 H -0.165 1.165 7 C -0.147 4.147 8 C -0.157 4.157 9 C 0.051 3.949 10 H 0.122 0.878 11 C 0.278 3.722 12 N -0.420 5.420 13 O -0.399 6.399 14 N -0.350 5.350 15 N 0.006 4.994 16 C -0.135 4.135 17 C -0.163 4.163 18 C -0.168 4.168 19 C 0.062 3.938 20 H 0.099 0.901 21 H 0.145 0.855 22 H 0.128 0.872 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.230 0.770 26 H 0.234 0.766 27 H 0.191 0.809 28 H 0.148 0.852 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.291 1.418 1.902 2.701 hybrid contribution 0.493 -1.463 0.298 1.573 sum -0.798 -0.045 2.199 2.340 Atomic orbital electron populations 1.69471 1.09015 1.37104 1.07957 1.31583 0.96070 1.06049 0.92830 0.83701 0.76912 0.70633 0.81601 1.16516 1.16884 1.16526 1.22539 1.01789 0.94592 0.95824 1.22933 1.00231 0.91574 1.00960 1.21172 0.93715 0.98756 0.81220 0.87788 1.21461 0.91894 0.77691 0.81133 1.43930 1.12598 1.58868 1.26602 1.90766 1.25869 1.55285 1.68002 1.50847 1.73805 1.01558 1.08803 1.76657 1.08804 1.17833 0.96090 1.25624 0.90297 0.96085 1.01538 1.21955 1.01141 0.93418 0.99803 1.24069 0.97751 0.99639 0.95373 1.20879 0.95843 0.82103 0.95022 0.90119 0.85536 0.87225 0.88377 0.88960 0.77017 0.76649 0.80881 0.85238 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 -0.14 13.29 56.23 0.75 0.61 15 2 C -0.02 0.02 4.77 -13.90 -0.07 -0.05 15 3 Si 1.06 -1.65 29.90 -169.99 -5.08 -6.74 15 4 H -0.24 0.02 7.11 56.52 0.40 0.43 15 5 H -0.25 0.39 7.11 56.52 0.40 0.79 15 6 H -0.24 0.49 7.11 56.52 0.40 0.89 15 7 C -0.13 0.09 2.37 -90.03 -0.21 -0.12 15 8 C -0.12 0.24 5.80 -24.38 -0.14 0.10 15 9 C 0.16 0.04 3.86 -68.20 -0.26 -0.23 15 10 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 15 11 C 0.50 0.85 7.22 -10.99 -0.08 0.77 15 12 N -0.86 1.81 8.87 31.22 0.28 2.09 15 13 O -0.52 -3.28 17.39 5.56 0.10 -3.18 15 14 N -0.54 -1.41 3.32 -100.31 -0.33 -1.74 15 15 N -0.19 -0.78 12.21 32.18 0.39 -0.39 15 16 C 0.07 0.15 11.49 -14.44 -0.17 -0.01 15 17 C -0.14 -0.20 10.01 -37.85 -0.38 -0.58 15 18 C -0.14 -0.15 9.61 -35.91 -0.35 -0.50 15 19 C 0.17 0.18 3.41 -67.82 -0.23 -0.05 15 20 H 0.08 0.10 7.93 -51.93 -0.41 -0.32 15 21 H 0.32 -0.28 6.53 -40.82 -0.27 -0.55 15 22 H 0.11 -0.06 7.62 -51.93 -0.40 -0.45 15 23 H 0.10 -0.34 7.97 -51.93 -0.41 -0.76 15 24 H 0.09 -0.28 6.00 -51.93 -0.31 -0.59 15 25 H 0.40 -2.11 8.83 -40.82 -0.36 -2.47 15 26 H 0.40 -0.96 8.93 -40.82 -0.36 -1.33 15 27 H 0.17 -0.16 8.06 -52.48 -0.42 -0.58 15 28 H 0.13 -0.08 8.06 -52.49 -0.42 -0.50 15 29 H 0.13 -0.13 8.02 -52.48 -0.42 -0.55 15 LS Contribution 250.94 15.07 3.78 3.78 Total: 0.00 -7.77 250.94 -5.01 -12.79 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: -3.01 Total: -6.55 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.88 Total: -0.67 kcal Atomic # 7 Polarization: -0.52 SS G_CDS: 1.08 Total: 0.57 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.10 Total: -3.18 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: -5.08 Total: -6.74 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -7.77 -5.01 -12.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307312708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.626 kcal (2) G-P(sol) polarization free energy of solvation -7.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds