Wall clock time and date at job start Mon Mar 30 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27944 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48504 * 109.46841 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47037 * 120.00194 * 3 2 1 6 6 H 1.48495 * 109.46982 * 240.00522 * 3 2 1 7 7 C 1.50692 * 120.00363 * 180.02562 * 2 1 3 8 8 C 1.55488 * 110.92133 * 331.82368 * 7 2 1 9 9 C 1.54956 * 101.93005 * 155.74893 * 8 7 2 10 10 H 1.08997 * 110.18316 * 208.77381 * 9 8 7 11 11 C 1.50697 * 110.18276 * 86.94360 * 9 8 7 12 12 N 1.34780 * 119.99955 * 80.00486 * 11 9 8 13 13 O 1.21279 * 120.00313 * 260.00099 * 11 9 8 14 14 N 1.46225 * 105.81400 * 327.85650 * 9 8 7 15 15 N 1.40472 * 128.82173 * 190.07330 * 14 9 8 16 16 C 1.31191 * 115.29047 * 217.75596 * 15 14 9 17 17 C 1.46629 * 120.12534 * 1.22954 * 16 15 14 18 18 C 1.33530 * 121.95025 * 341.93014 * 17 16 15 19 19 C 1.47928 * 109.47984 * 13.74993 * 14 9 8 20 20 H 1.09006 * 110.85878 * 250.32980 * 19 14 9 21 21 H 0.96997 * 119.99676 * 174.30296 * 1 2 3 22 22 H 1.08998 * 110.81573 * 208.15683 * 7 2 1 23 23 H 1.09005 * 110.94131 * 273.90388 * 8 7 2 24 24 H 1.08996 * 110.93963 * 37.55098 * 8 7 2 25 25 H 0.97001 * 120.00006 * 359.97438 * 12 11 9 26 26 H 0.96999 * 120.00210 * 180.02562 * 12 11 9 27 27 H 1.08004 * 119.93810 * 181.24638 * 16 15 14 28 28 H 1.07997 * 119.02468 * 161.95570 * 17 16 15 29 29 H 1.08003 * 120.77164 * 180.37108 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6178 0.0000 4 1 1.2483 2.7465 0.0006 5 1 3.0671 1.6965 1.2124 6 1 3.0670 1.6966 -1.2125 7 6 2.0330 -1.3050 -0.0006 8 6 1.2019 -2.4263 0.6847 9 6 1.7985 -3.7046 0.0434 10 1 1.0473 -4.4935 0.0085 11 6 3.0018 -4.1654 0.8250 12 7 2.8372 -4.8654 1.9649 13 8 4.1182 -3.9064 0.4283 14 7 2.1932 -3.3234 -1.3120 15 7 2.6060 -4.1461 -2.3731 16 6 3.5634 -3.6547 -3.1235 17 6 4.1441 -2.3449 -2.8116 18 6 3.5226 -1.4667 -2.0206 19 6 2.1883 -1.8490 -1.4310 20 1 1.3669 -1.5133 -2.0641 21 1 -0.4849 -0.8359 -0.0834 22 1 3.0046 -1.1914 0.4802 23 1 1.3578 -2.4227 1.7636 24 1 0.1431 -2.3277 0.4457 25 1 1.9443 -5.0723 2.2824 26 1 3.6116 -5.1617 2.4683 27 1 3.9244 -4.2159 -3.9728 28 1 5.1025 -2.0825 -3.2344 29 1 3.9651 -0.5047 -1.8083 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307312708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:02 Heat of formation + Delta-G solvation = 61.140366 kcal Electronic energy + Delta-G solvation = -15744.223836 eV Core-core repulsion = 13170.044227 eV Total energy + Delta-G solvation = -2574.179609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74828 -39.70530 -37.90048 -35.38507 -34.60337 -33.57198 -30.44118 -29.82200 -24.98347 -24.37109 -24.29516 -21.56473 -20.79395 -19.11926 -18.80481 -17.63958 -17.58568 -17.03933 -16.70328 -16.24858 -15.65978 -15.25447 -14.98451 -14.63747 -14.27946 -13.79206 -13.58004 -13.20028 -13.10841 -12.69420 -12.25154 -12.17939 -11.92291 -11.62716 -11.33386 -11.01092 -10.72076 -10.30638 -10.23577 -8.74481 0.19869 0.79142 1.22679 1.37213 1.57723 1.67588 1.87196 1.92426 2.00697 2.51590 3.13290 3.33988 3.50914 3.81028 3.86496 3.90398 3.98619 4.08711 4.25479 4.31370 4.51727 4.59814 4.65149 4.65730 5.06708 5.17186 5.26171 5.42436 5.78717 5.93311 6.38854 6.83373 7.06705 7.27050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.012 4.012 3 Si 1.079 2.921 4 H -0.265 1.265 5 H -0.242 1.242 6 H -0.233 1.233 7 C -0.122 4.122 8 C -0.110 4.110 9 C 0.156 3.844 10 H 0.118 0.882 11 C 0.493 3.507 12 N -0.836 5.836 13 O -0.577 6.577 14 N -0.547 5.547 15 N -0.230 5.230 16 C 0.069 3.931 17 C -0.160 4.160 18 C -0.149 4.149 19 C 0.164 3.836 20 H 0.075 0.925 21 H 0.329 0.671 22 H 0.108 0.892 23 H 0.116 0.884 24 H 0.104 0.896 25 H 0.418 0.582 26 H 0.406 0.594 27 H 0.195 0.805 28 H 0.146 0.854 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 0.730 2.692 2.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.255 5.255 2 C -0.257 4.257 3 Si 0.892 3.108 4 H -0.189 1.189 5 H -0.166 1.166 6 H -0.156 1.156 7 C -0.145 4.145 8 C -0.149 4.149 9 C 0.047 3.953 10 H 0.135 0.865 11 C 0.276 3.724 12 N -0.401 5.401 13 O -0.455 6.455 14 N -0.362 5.362 15 N -0.032 5.032 16 C -0.139 4.139 17 C -0.181 4.181 18 C -0.174 4.174 19 C 0.057 3.943 20 H 0.092 0.908 21 H 0.149 0.851 22 H 0.127 0.873 23 H 0.135 0.865 24 H 0.122 0.878 25 H 0.250 0.750 26 H 0.237 0.763 27 H 0.212 0.788 28 H 0.164 0.836 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.511 1.510 2.529 3.311 hybrid contribution 0.534 -1.519 0.127 1.615 sum -0.977 -0.009 2.656 2.830 Atomic orbital electron populations 1.69482 1.09519 1.37603 1.08903 1.31724 0.95792 1.06241 0.91931 0.83439 0.76195 0.69119 0.82053 1.18919 1.16563 1.15628 1.22513 1.02046 0.94983 0.94944 1.22987 1.00457 0.89742 1.01740 1.21394 0.93352 1.00180 0.80416 0.86488 1.21771 0.91550 0.77454 0.81658 1.43799 1.13824 1.57185 1.25320 1.90737 1.27683 1.57610 1.69512 1.51006 1.73947 1.02023 1.09193 1.76561 1.10141 1.19199 0.97339 1.26080 0.89637 0.96542 1.01630 1.22228 1.02047 0.93402 1.00373 1.24391 0.97850 1.00377 0.94795 1.20935 0.95651 0.81734 0.95932 0.90771 0.85053 0.87338 0.86541 0.87796 0.75030 0.76297 0.78836 0.83595 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -0.16 13.29 24.11 0.32 0.16 15 2 C -0.01 0.02 4.77 88.67 0.42 0.45 15 3 Si 1.08 -3.62 29.90 68.60 2.05 -1.57 15 4 H -0.27 -0.11 7.11 99.48 0.71 0.60 15 5 H -0.24 0.92 7.11 99.48 0.71 1.63 15 6 H -0.23 1.11 7.11 99.48 0.71 1.82 15 7 C -0.12 0.20 2.37 -10.41 -0.02 0.17 15 8 C -0.11 0.52 5.80 32.12 0.19 0.71 15 9 C 0.16 0.07 3.86 44.97 0.17 0.24 15 10 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 15 11 C 0.49 1.78 7.22 87.66 0.63 2.41 15 12 N -0.84 3.99 8.87 -173.53 -1.54 2.45 15 13 O -0.58 -7.77 17.39 -3.03 -0.05 -7.82 15 14 N -0.55 -3.23 3.32 -471.29 -1.56 -4.80 15 15 N -0.23 -2.12 12.21 -52.09 -0.64 -2.75 15 16 C 0.07 0.35 11.49 86.98 1.00 1.35 15 17 C -0.16 -0.53 10.01 23.39 0.23 -0.29 15 18 C -0.15 -0.37 9.61 24.65 0.24 -0.13 15 19 C 0.16 0.42 3.41 44.28 0.15 0.57 15 20 H 0.07 0.23 7.93 -2.38 -0.02 0.22 15 21 H 0.33 -0.65 6.53 -92.71 -0.61 -1.26 15 22 H 0.11 -0.13 7.62 -2.39 -0.02 -0.15 15 23 H 0.12 -0.99 7.97 -2.38 -0.02 -1.01 15 24 H 0.10 -0.73 6.00 -2.39 -0.01 -0.74 15 25 H 0.42 -4.89 8.83 -92.71 -0.82 -5.71 15 26 H 0.41 -2.09 8.93 -92.71 -0.83 -2.92 15 27 H 0.20 -0.24 8.06 -2.91 -0.02 -0.27 15 28 H 0.15 -0.16 8.06 -2.91 -0.02 -0.19 15 29 H 0.15 -0.33 8.02 -2.91 -0.02 -0.35 15 Total: 0.00 -18.85 250.94 1.30 -17.55 By element: Atomic # 1 Polarization: -8.39 SS G_CDS: -0.29 Total: -8.68 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 3.01 Total: 5.47 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -3.42 Total: -4.94 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.05 Total: -7.82 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: 2.05 Total: -1.57 kcal Total: -18.85 1.30 -17.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307312708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.686 kcal (2) G-P(sol) polarization free energy of solvation -18.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds