Wall clock time and date at job start Mon Mar 30 2020 03:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47079 * 269.99697 * 3 2 1 5 5 H 1.48501 * 109.47372 * 30.00063 * 3 2 1 6 6 H 1.48507 * 109.46932 * 149.99881 * 3 2 1 7 7 C 1.37873 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00065 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00162 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47651 * 184.85650 * 9 7 2 11 11 C 1.47006 * 110.99899 * 300.85080 * 10 9 7 12 12 C 1.53105 * 109.25831 * 182.39040 * 11 10 9 13 13 O 1.43010 * 109.25438 * 303.14597 * 12 11 10 14 14 C 1.43019 * 113.74126 * 58.67279 * 13 12 11 15 15 H 1.08998 * 109.50286 * 61.25877 * 14 13 12 16 16 C 1.52994 * 109.50888 * 181.39372 * 14 13 12 17 17 F 1.39896 * 109.47259 * 64.78202 * 16 14 13 18 18 F 1.39900 * 109.47142 * 184.78076 * 16 14 13 19 19 C 1.47022 * 110.99453 * 64.47841 * 10 9 7 20 20 H 0.97005 * 119.99888 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47172 * 64.85823 * 9 7 2 22 22 H 1.08998 * 109.47117 * 304.85986 * 9 7 2 23 23 H 1.09002 * 109.50504 * 302.31634 * 11 10 9 24 24 H 1.09004 * 109.51254 * 62.40783 * 11 10 9 25 25 H 1.09002 * 109.50405 * 63.08176 * 12 11 10 26 26 H 1.09005 * 109.50515 * 183.21230 * 12 11 10 27 27 H 1.08997 * 109.47404 * 304.78137 * 16 14 13 28 28 H 1.08992 * 109.50871 * 297.54327 * 19 10 9 29 29 H 1.09002 * 109.50369 * 57.68025 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 4.0012 -2.5742 -0.1156 11 6 3.5128 -3.4024 0.9965 12 6 4.0937 -4.8131 0.8685 13 8 3.7391 -5.3553 -0.4065 14 6 4.1995 -4.5741 -1.5125 15 1 5.2881 -4.5231 -1.4940 16 6 3.7395 -5.2200 -2.8209 17 9 2.3429 -5.1838 -2.8931 18 9 4.2807 -4.5179 -3.9032 19 6 3.6197 -3.1609 -1.4086 20 1 -0.4850 0.8401 -0.0004 21 1 3.8744 -0.7573 0.9315 22 1 3.8751 -0.6070 -0.8421 23 1 3.8284 -2.9634 1.9430 24 1 2.4244 -3.4517 0.9630 25 1 5.1793 -4.7691 0.9562 26 1 3.6894 -5.4462 1.6584 27 1 4.0783 -6.2555 -2.8537 28 1 2.5332 -3.2071 -1.4810 29 1 4.0133 -2.5456 -2.2177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307419989.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:54 Heat of formation + Delta-G solvation = -141.565987 kcal Electronic energy + Delta-G solvation = -15901.009263 eV Core-core repulsion = 12881.006201 eV Total energy + Delta-G solvation = -3020.003063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.78048 -46.75971 -39.14760 -35.49647 -32.38405 -31.68734 -28.82928 -26.75734 -24.81230 -22.77109 -21.40141 -19.73174 -17.35039 -17.22711 -16.87050 -16.73378 -15.61865 -15.14491 -14.47791 -14.35396 -13.92915 -13.72730 -13.45679 -13.12619 -12.81433 -12.45976 -12.28119 -11.64441 -11.33181 -11.12281 -10.89094 -10.79343 -10.31588 -10.17723 -10.12332 -9.58791 -9.29459 -8.64112 -7.40783 -6.14602 -4.15950 3.24574 3.32285 3.35048 3.38769 4.18028 4.34536 4.36825 4.59625 4.96568 5.08293 5.18366 5.36250 5.44476 5.56855 5.67004 5.78600 5.97513 6.29773 6.57047 6.67181 6.78236 6.97061 7.22100 7.44506 7.83922 7.87325 8.38044 8.87083 9.46825 10.98140 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.009199 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.581944 B = 3043.071130 C = 3339.383401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.155 3.845 10 N -0.531 5.531 11 C 0.019 3.981 12 C 0.069 3.931 13 O -0.378 6.378 14 C 0.044 3.956 15 H 0.088 0.912 16 C 0.275 3.725 17 F -0.194 7.194 18 F -0.199 7.199 19 C 0.027 3.973 20 H 0.264 0.736 21 H 0.032 0.968 22 H 0.027 0.973 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -9.367 -1.916 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.595 4.595 8 H 0.094 0.906 9 C 0.029 3.971 10 N -0.255 5.255 11 C -0.110 4.110 12 C -0.008 4.008 13 O -0.298 6.298 14 C -0.015 4.015 15 H 0.106 0.894 16 C 0.221 3.779 17 F -0.176 7.176 18 F -0.180 7.180 19 C -0.102 4.102 20 H 0.074 0.926 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.132 0.868 28 H 0.085 0.915 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.847 -9.377 -1.929 13.733 hybrid contribution -0.560 1.304 -0.072 1.421 sum 9.287 -8.073 -2.001 12.467 Atomic orbital electron populations 1.69930 1.06384 1.27102 1.49913 1.24972 0.94718 0.99247 0.94027 0.86786 0.80346 0.83511 0.78695 1.20108 1.21194 1.18881 1.21660 0.90486 0.94857 1.52527 0.90573 1.20192 0.94899 0.84980 0.97069 1.62714 1.58074 1.04121 1.00577 1.22644 1.00139 0.92461 0.95746 1.22775 0.99208 0.94850 0.83959 1.87844 1.79062 1.48727 1.14122 1.23133 0.99654 0.92580 0.86158 0.89387 1.21587 0.75525 0.96731 0.84050 1.93015 1.30434 1.97499 1.96610 1.92985 1.85772 1.82162 1.57107 1.22526 1.01020 0.92444 0.94212 0.92572 0.95025 0.95469 0.90285 0.92211 0.92763 0.88554 0.86814 0.91519 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 15 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 15 3 Si 0.88 21.34 27.38 -169.99 -4.65 16.68 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.26 -6.13 6.68 56.52 0.38 -5.75 15 7 C -0.56 -15.54 8.21 -34.44 -0.28 -15.83 15 8 H 0.08 2.33 6.05 -52.49 -0.32 2.02 15 9 C 0.16 3.71 4.21 -4.98 -0.02 3.69 15 10 N -0.53 -10.99 4.94 -235.74 -1.16 -12.16 15 11 C 0.02 0.35 5.30 -3.71 -0.02 0.33 15 12 C 0.07 1.03 7.01 37.21 0.26 1.29 15 13 O -0.38 -6.22 10.46 -35.23 -0.37 -6.59 15 14 C 0.04 0.70 3.02 -26.68 -0.08 0.62 15 15 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 16 C 0.28 3.91 5.13 37.15 0.19 4.10 15 17 F -0.19 -3.39 16.56 2.25 0.04 -3.36 15 18 F -0.20 -2.94 17.08 2.25 0.04 -2.90 15 19 C 0.03 0.53 4.42 -3.70 -0.02 0.52 15 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 21 H 0.03 0.76 7.54 -51.93 -0.39 0.37 15 22 H 0.03 0.65 7.29 -51.93 -0.38 0.27 15 23 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 24 H 0.06 1.32 6.42 -51.93 -0.33 0.98 15 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 26 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.11 1.18 8.14 -51.93 -0.42 0.75 15 28 H 0.07 1.56 6.38 -51.93 -0.33 1.22 15 29 H 0.08 1.58 8.01 -51.93 -0.42 1.16 15 LS Contribution 244.74 15.07 3.69 3.69 Total: -1.00 -30.93 244.74 -5.16 -36.08 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -3.44 Total: -1.56 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.07 Total: -3.27 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.39 Total: -38.78 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.37 Total: -6.59 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.08 Total: -6.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.65 Total: 16.68 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.93 -5.16 -36.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307419989.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.485 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds