Wall clock time and date at job start Mon Mar 30 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47079 * 269.99697 * 3 2 1 5 5 H 1.48501 * 109.47372 * 30.00063 * 3 2 1 6 6 H 1.48507 * 109.46932 * 149.99881 * 3 2 1 7 7 C 1.37873 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00065 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00162 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47651 * 184.85650 * 9 7 2 11 11 C 1.47006 * 110.99899 * 300.85080 * 10 9 7 12 12 C 1.53105 * 109.25831 * 182.39040 * 11 10 9 13 13 O 1.43010 * 109.25438 * 303.14597 * 12 11 10 14 14 C 1.43019 * 113.74126 * 58.67279 * 13 12 11 15 15 H 1.08998 * 109.50286 * 61.25877 * 14 13 12 16 16 C 1.52994 * 109.50888 * 181.39372 * 14 13 12 17 17 F 1.39896 * 109.47259 * 64.78202 * 16 14 13 18 18 F 1.39900 * 109.47142 * 184.78076 * 16 14 13 19 19 C 1.47022 * 110.99453 * 64.47841 * 10 9 7 20 20 H 0.97005 * 119.99888 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47172 * 64.85823 * 9 7 2 22 22 H 1.08998 * 109.47117 * 304.85986 * 9 7 2 23 23 H 1.09002 * 109.50504 * 302.31634 * 11 10 9 24 24 H 1.09004 * 109.51254 * 62.40783 * 11 10 9 25 25 H 1.09002 * 109.50405 * 63.08176 * 12 11 10 26 26 H 1.09005 * 109.50515 * 183.21230 * 12 11 10 27 27 H 1.08997 * 109.47404 * 304.78137 * 16 14 13 28 28 H 1.08992 * 109.50871 * 297.54327 * 19 10 9 29 29 H 1.09002 * 109.50369 * 57.68025 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 4.0012 -2.5742 -0.1156 11 6 3.5128 -3.4024 0.9965 12 6 4.0937 -4.8131 0.8685 13 8 3.7391 -5.3553 -0.4065 14 6 4.1995 -4.5741 -1.5125 15 1 5.2881 -4.5231 -1.4940 16 6 3.7395 -5.2200 -2.8209 17 9 2.3429 -5.1838 -2.8931 18 9 4.2807 -4.5179 -3.9032 19 6 3.6197 -3.1609 -1.4086 20 1 -0.4850 0.8401 -0.0004 21 1 3.8744 -0.7573 0.9315 22 1 3.8751 -0.6070 -0.8421 23 1 3.8284 -2.9634 1.9430 24 1 2.4244 -3.4517 0.9630 25 1 5.1793 -4.7691 0.9562 26 1 3.6894 -5.4462 1.6584 27 1 4.0783 -6.2555 -2.8537 28 1 2.5332 -3.2071 -1.4810 29 1 4.0133 -2.5456 -2.2177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307419989.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:53 Heat of formation + Delta-G solvation = -165.372933 kcal Electronic energy + Delta-G solvation = -15902.041610 eV Core-core repulsion = 12881.006201 eV Total energy + Delta-G solvation = -3021.035409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.97461 -47.98110 -40.57077 -37.12329 -34.51787 -33.01505 -30.60621 -28.28570 -26.47052 -24.27345 -23.00116 -21.33294 -19.11094 -18.55060 -18.28867 -18.07208 -16.97117 -16.61510 -16.21000 -15.99094 -15.65245 -15.06333 -14.79008 -14.56350 -14.34916 -14.16027 -13.77749 -13.42706 -13.06122 -12.67870 -12.51713 -12.33231 -12.08754 -11.90465 -11.75628 -11.37256 -10.84393 -10.70344 -9.21773 -8.36519 -6.43701 1.33344 1.34256 1.46636 2.19622 2.29799 2.89247 2.98195 3.17013 3.38190 3.57482 3.91898 4.08354 4.10536 4.27307 4.35629 4.43691 4.57196 4.81616 4.86893 4.98800 4.99822 5.09621 5.40947 5.92021 5.96000 6.16503 6.20644 6.62621 7.23232 8.80076 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.009199 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.581944 B = 3043.071130 C = 3339.383401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.241 1.241 7 C -0.557 4.557 8 H 0.029 0.971 9 C 0.160 3.840 10 N -0.521 5.521 11 C 0.016 3.984 12 C 0.075 3.925 13 O -0.387 6.387 14 C 0.050 3.950 15 H 0.121 0.879 16 C 0.272 3.728 17 F -0.219 7.219 18 F -0.203 7.203 19 C 0.026 3.974 20 H 0.267 0.733 21 H 0.040 0.960 22 H 0.032 0.968 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.166 0.834 28 H 0.018 0.982 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.428 -9.705 -1.748 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.164 1.164 7 C -0.596 4.596 8 H 0.048 0.952 9 C 0.032 3.968 10 N -0.244 5.244 11 C -0.113 4.113 12 C -0.001 4.001 13 O -0.306 6.306 14 C -0.009 4.009 15 H 0.139 0.861 16 C 0.218 3.782 17 F -0.201 7.201 18 F -0.184 7.184 19 C -0.103 4.103 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.109 0.891 24 H 0.032 0.968 25 H 0.103 0.897 26 H 0.141 0.859 27 H 0.183 0.817 28 H 0.036 0.964 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.679 -9.741 -1.759 16.086 hybrid contribution -1.486 1.334 -0.111 2.000 sum 11.193 -8.407 -1.870 14.123 Atomic orbital electron populations 1.70095 1.08529 1.28348 1.51781 1.26004 0.95595 1.03731 0.93593 0.85610 0.79601 0.77858 0.79256 1.19285 1.20810 1.16416 1.21879 0.92806 0.93162 1.51709 0.95240 1.20083 0.91829 0.87435 0.97428 1.62749 1.57076 1.03054 1.01562 1.22762 0.97670 0.95209 0.95659 1.22905 1.00833 0.92253 0.84155 1.87845 1.79556 1.48540 1.14668 1.23205 1.01060 0.89688 0.86975 0.86135 1.22071 0.74146 0.98959 0.83023 1.92971 1.32755 1.97676 1.96662 1.92976 1.85620 1.82602 1.57199 1.22532 0.98328 0.95649 0.93818 0.92391 0.94207 0.95019 0.89132 0.96756 0.89730 0.85900 0.81674 0.96381 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.14 13.96 21.45 0.30 -59.84 15 2 C 0.01 0.52 5.47 84.65 0.46 0.99 15 3 Si 0.95 43.94 27.38 68.60 1.88 45.82 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.24 -10.12 6.68 99.48 0.66 -9.45 15 7 C -0.56 -32.22 8.21 25.60 0.21 -32.01 15 8 H 0.03 1.94 6.05 -2.91 -0.02 1.92 15 9 C 0.16 7.57 4.21 85.55 0.36 7.93 15 10 N -0.52 -21.22 4.94 -899.76 -4.44 -25.66 15 11 C 0.02 0.58 5.30 86.32 0.46 1.04 15 12 C 0.07 2.03 7.01 72.02 0.50 2.54 15 13 O -0.39 -11.82 10.46 -148.98 -1.56 -13.38 15 14 C 0.05 1.46 3.02 30.63 0.09 1.56 15 15 H 0.12 2.84 8.14 -2.39 -0.02 2.82 15 16 C 0.27 7.14 5.13 71.98 0.37 7.51 15 17 F -0.22 -7.66 16.56 44.97 0.74 -6.92 15 18 F -0.20 -5.61 17.08 44.97 0.77 -4.84 15 19 C 0.03 1.03 4.42 86.31 0.38 1.41 15 20 H 0.27 15.78 8.31 -92.70 -0.77 15.01 15 21 H 0.04 1.83 7.54 -2.39 -0.02 1.81 15 22 H 0.03 1.48 7.29 -2.39 -0.02 1.46 15 23 H 0.09 3.11 8.14 -2.39 -0.02 3.09 15 24 H 0.01 0.66 6.42 -2.38 -0.02 0.64 15 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 26 H 0.12 2.71 8.14 -2.38 -0.02 2.69 15 27 H 0.17 2.74 8.14 -2.39 -0.02 2.72 15 28 H 0.02 0.88 6.38 -2.39 -0.02 0.87 15 29 H 0.08 3.12 8.01 -2.39 -0.02 3.10 15 Total: -1.00 -70.28 244.74 1.64 -68.64 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.11 Total: 5.23 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 2.84 Total: -9.04 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -4.14 Total: -85.51 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.56 Total: -13.38 kcal Atomic # 9 Polarization: -13.27 SS G_CDS: 1.51 Total: -11.76 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -70.28 1.64 -68.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307419989.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.734 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds