Wall clock time and date at job start Mon Mar 30 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.47006 * 111.00285 * 293.63247 * 10 9 7 12 12 C 1.53101 * 109.26190 * 177.60744 * 11 10 9 13 13 O 1.43020 * 109.25617 * 56.84928 * 12 11 10 14 14 C 1.43021 * 113.73919 * 301.33283 * 13 12 11 15 15 H 1.08998 * 109.50602 * 298.73794 * 14 13 12 16 16 C 1.52997 * 109.54206 * 178.62406 * 14 13 12 17 17 F 1.39902 * 109.46638 * 65.19565 * 16 14 13 18 18 F 1.39902 * 109.47146 * 185.19148 * 16 14 13 19 19 C 1.47016 * 110.99837 * 169.99736 * 10 9 7 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.08998 * 109.50801 * 297.54617 * 11 10 9 24 24 H 1.08998 * 109.50572 * 57.67603 * 11 10 9 25 25 H 1.09002 * 109.50522 * 296.91967 * 12 11 10 26 26 H 1.08993 * 109.54601 * 176.80294 * 12 11 10 27 27 H 1.08994 * 109.47220 * 305.19935 * 16 14 13 28 28 H 1.08996 * 109.50975 * 302.32925 * 19 10 9 29 29 H 1.08998 * 109.50488 * 62.45680 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 2.9661 -3.6587 -1.2568 12 6 3.9877 -4.7971 -1.1904 13 8 3.3070 -6.0270 -0.9271 14 6 2.5565 -6.0205 0.2904 15 1 3.2297 -5.8575 1.1320 16 6 1.8434 -7.3636 0.4592 17 9 2.7928 -8.3785 0.6204 18 9 1.0173 -7.3144 1.5871 19 6 1.5205 -4.8945 0.2389 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.2837 -3.8302 -2.0893 24 1 3.4857 -2.7114 -1.4004 25 1 4.7025 -4.5985 -0.3917 26 1 4.5153 -4.8695 -2.1414 27 1 1.2396 -7.5680 -0.4249 28 1 0.9848 -4.8493 1.1871 29 1 0.8150 -5.0857 -0.5696 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307419991.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:56 Heat of formation + Delta-G solvation = -166.999082 kcal Electronic energy + Delta-G solvation = -15537.775149 eV Core-core repulsion = 12516.669225 eV Total energy + Delta-G solvation = -3021.105925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.01764 -48.02894 -40.59790 -36.98598 -34.59873 -33.16964 -30.21940 -28.33954 -26.09442 -24.52285 -23.15392 -21.52931 -18.74990 -18.63125 -18.19827 -18.06173 -17.02578 -16.56743 -16.29922 -15.98345 -15.51534 -15.17957 -14.88204 -14.69918 -14.38803 -14.07028 -13.63138 -13.24235 -12.97864 -12.75990 -12.63952 -12.49792 -12.11361 -12.00035 -11.50468 -11.39701 -10.73698 -10.62445 -9.21768 -8.23420 -6.34249 1.41827 1.44692 1.52603 2.11513 2.37740 2.75386 3.09197 3.12675 3.43234 3.48495 3.79340 4.03031 4.08802 4.15163 4.29056 4.39069 4.59047 4.67312 4.90167 4.91645 5.12313 5.16409 5.58782 5.87591 5.96981 6.15011 6.44824 6.80063 7.35772 8.87803 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.051154 B = 0.006796 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.240582 B = 4118.861872 C = 4494.180125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.024 3.976 12 C 0.074 3.926 13 O -0.380 6.380 14 C 0.053 3.947 15 H 0.085 0.915 16 C 0.281 3.719 17 F -0.204 7.204 18 F -0.201 7.201 19 C 0.025 3.975 20 H 0.265 0.735 21 H 0.006 0.994 22 H -0.034 1.034 23 H 0.026 0.974 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.132 0.868 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -11.702 -1.816 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.267 5.267 11 C -0.105 4.105 12 C -0.002 4.002 13 O -0.299 6.299 14 C -0.006 4.006 15 H 0.103 0.897 16 C 0.227 3.773 17 F -0.185 7.185 18 F -0.182 7.182 19 C -0.104 4.104 20 H 0.074 0.926 21 H 0.025 0.975 22 H -0.016 1.016 23 H 0.044 0.956 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.164 0.836 28 H 0.102 0.898 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.843 -11.695 -1.525 13.162 hybrid contribution -0.685 1.110 -0.255 1.329 sum 5.158 -10.585 -1.781 11.908 Atomic orbital electron populations 1.70076 1.07820 1.28119 1.51428 1.25921 0.95722 1.03268 0.94607 0.85406 0.78117 0.77715 0.79203 1.18974 1.21011 1.19343 1.21396 0.93739 0.90775 1.50595 0.91525 1.19409 0.90011 0.88614 0.93789 1.62247 1.27550 1.02400 1.34519 1.22736 0.96968 1.00698 0.90063 1.22892 0.92899 0.81004 1.03415 1.87845 1.65844 1.36711 1.39531 1.22968 0.94350 0.93219 0.90098 0.89748 1.21654 0.83158 0.84543 0.87951 1.92977 1.66822 1.62262 1.96478 1.92992 1.72528 1.96666 1.56060 1.22632 0.95535 0.90073 1.02145 0.92590 0.97543 1.01609 0.95579 0.89670 0.91638 0.85020 0.83647 0.89760 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 13.29 21.45 0.28 -55.22 15 2 C 0.00 0.18 5.46 84.66 0.46 0.64 15 3 Si 0.97 43.22 29.54 68.60 2.03 45.25 15 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.53 -29.14 8.49 25.60 0.22 -28.92 15 8 H 0.07 3.56 7.14 -2.91 -0.02 3.54 15 9 C 0.21 10.91 4.72 85.56 0.40 11.31 15 10 N -0.54 -22.91 4.72 -899.79 -4.24 -27.15 15 11 C 0.02 0.86 5.46 86.32 0.47 1.33 15 12 C 0.07 2.05 7.01 72.02 0.50 2.56 15 13 O -0.38 -11.04 10.47 -148.98 -1.56 -12.60 15 14 C 0.05 1.54 2.99 30.63 0.09 1.63 15 15 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 16 C 0.28 6.81 5.06 71.98 0.36 7.17 15 17 F -0.20 -5.31 17.33 44.97 0.78 -4.53 15 18 F -0.20 -5.35 16.69 44.97 0.75 -4.60 15 19 C 0.03 0.88 4.71 86.31 0.41 1.28 15 20 H 0.27 14.85 8.31 -92.71 -0.77 14.08 15 21 H 0.01 0.37 8.04 -2.39 -0.02 0.35 15 22 H -0.03 -1.92 8.12 -2.39 -0.02 -1.94 15 23 H 0.03 0.98 8.14 -2.39 -0.02 0.96 15 24 H 0.08 3.28 6.83 -2.39 -0.02 3.27 15 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.13 2.78 8.14 -2.39 -0.02 2.77 15 27 H 0.15 2.73 8.14 -2.39 -0.02 2.71 15 28 H 0.08 3.00 7.74 -2.39 -0.02 2.98 15 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 Total: -1.00 -62.78 252.25 2.10 -60.68 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.14 Total: 1.17 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 2.92 Total: -2.99 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.96 Total: -82.37 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -1.56 Total: -12.60 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 1.53 Total: -9.13 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -62.78 2.10 -60.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307419991.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.321 kcal (2) G-P(sol) polarization free energy of solvation -62.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds