Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99979 * 2 1 4 4 H 1.48500 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47006 * 299.99937 * 3 2 1 6 6 H 1.48503 * 109.47230 * 60.00253 * 3 2 1 7 7 C 1.37881 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00651 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99386 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.47445 * 110.99514 * 69.16112 * 10 9 7 12 12 C 1.54317 * 107.23392 * 123.26035 * 11 10 9 13 13 F 1.39893 * 110.71101 * 140.66452 * 12 11 10 14 14 F 1.39910 * 110.70396 * 263.72465 * 12 11 10 15 15 C 1.55262 * 103.08583 * 22.20016 * 12 11 10 16 16 C 1.47835 * 111.00106 * 190.00203 * 10 9 7 17 17 H 1.09010 * 110.37610 * 332.58182 * 16 10 9 18 18 C 1.53000 * 110.37578 * 94.80915 * 16 10 9 19 19 O 1.42903 * 109.46726 * 63.44623 * 18 16 10 20 20 H 0.96997 * 120.00189 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46484 * 60.00369 * 9 7 2 22 22 H 1.08998 * 109.47244 * 300.00287 * 9 7 2 23 23 H 1.09004 * 109.88957 * 242.66069 * 11 10 9 24 24 H 1.09001 * 109.89334 * 3.68760 * 11 10 9 25 25 H 1.09000 * 111.09246 * 206.39121 * 15 12 11 26 26 H 1.09000 * 110.94387 * 82.53239 * 15 12 11 27 27 H 1.09002 * 109.47398 * 183.44867 * 18 16 10 28 28 H 1.09001 * 109.47194 * 303.45048 * 18 16 10 29 29 H 0.96700 * 113.99509 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 2.9222 -3.6996 1.2841 12 6 2.6812 -5.1147 1.8504 13 9 3.8443 -5.6140 2.4462 14 9 1.6227 -5.1078 2.7653 15 6 2.3120 -5.9402 0.5883 16 6 1.5168 -4.9016 -0.2415 17 1 0.4844 -4.8494 0.1047 18 6 1.5613 -5.2607 -1.7281 19 8 2.9187 -5.4544 -2.1308 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5566 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 3.9888 -3.5405 1.1254 24 1 2.5344 -2.9503 1.9744 25 1 1.6865 -6.7944 0.8473 26 1 3.2079 -6.2611 0.0568 27 1 0.9976 -6.1782 -1.8973 28 1 1.1214 -4.4513 -2.3108 29 1 3.0229 -5.6849 -3.0641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307712483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = -146.812757 kcal Electronic energy + Delta-G solvation = -15833.490423 eV Core-core repulsion = 12813.259844 eV Total energy + Delta-G solvation = -3020.230580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.50987 -46.67515 -38.40321 -35.80594 -33.00599 -30.69318 -29.40659 -26.45217 -24.86664 -22.36666 -20.88695 -19.78688 -17.42872 -17.05893 -16.58774 -16.14706 -15.34025 -14.75199 -14.56674 -13.86615 -13.84301 -13.74470 -13.01654 -12.92760 -12.73069 -12.28794 -12.02680 -11.88163 -11.37906 -11.10753 -10.69211 -10.64716 -10.62188 -10.19411 -9.97048 -9.58136 -9.25751 -8.50225 -7.46816 -6.08109 -4.09928 3.29246 3.36761 3.42318 4.00448 4.27680 4.34646 4.45029 4.64360 4.76982 5.03480 5.28490 5.42238 5.49803 5.63979 5.75408 5.89063 6.06631 6.17052 6.34789 6.42070 6.97290 7.18326 7.69910 7.86272 7.96373 8.05377 8.39749 8.98161 9.54991 11.02762 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.029260 B = 0.009316 C = 0.008137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.700016 B = 3004.809970 C = 3440.414356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.184 3.816 10 N -0.502 5.502 11 C 0.026 3.974 12 C 0.253 3.747 13 F -0.200 7.200 14 F -0.198 7.198 15 C -0.151 4.151 16 C 0.067 3.933 17 H 0.070 0.930 18 C 0.098 3.902 19 O -0.557 6.557 20 H 0.262 0.738 21 H 0.034 0.966 22 H -0.003 1.003 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -11.028 -1.204 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.059 3.941 10 N -0.227 5.227 11 C -0.103 4.103 12 C 0.216 3.784 13 F -0.181 7.181 14 F -0.179 7.179 15 C -0.190 4.190 16 C -0.042 4.042 17 H 0.088 0.912 18 C 0.019 3.981 19 O -0.361 6.361 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.015 0.985 23 H 0.113 0.887 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.146 -10.655 -0.933 11.148 hybrid contribution -0.448 0.659 0.270 0.841 sum 2.698 -9.996 -0.663 10.375 Atomic orbital electron populations 1.69959 1.06089 1.26829 1.50892 1.24995 0.94883 0.99424 0.95280 0.86416 0.80142 0.83213 0.77529 1.19565 1.20975 1.21056 1.21166 0.93675 0.89675 1.50213 0.91659 1.20048 0.90041 0.87528 0.96491 1.63749 1.28829 1.02177 1.27969 1.23672 1.02572 0.91471 0.92590 1.22717 0.72877 0.98311 0.84493 1.92954 1.49712 1.89237 1.86155 1.92992 1.57430 1.97503 1.70018 1.23613 1.03642 0.98055 0.93650 1.22593 0.96953 0.90327 0.94298 0.91245 1.21975 0.83203 0.98231 0.94652 1.86557 1.26249 1.93106 1.30189 0.92884 0.94835 0.98491 0.88664 0.89574 0.89607 0.86855 0.94118 0.92735 0.78531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 15 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 15 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 7 C -0.51 -14.17 8.63 -34.43 -0.30 -14.47 15 8 H 0.07 1.82 7.76 -52.49 -0.41 1.41 15 9 C 0.18 4.70 4.30 -4.97 -0.02 4.68 15 10 N -0.50 -10.80 4.75 -224.81 -1.07 -11.86 15 11 C 0.03 0.53 6.01 -2.84 -0.02 0.51 15 12 C 0.25 4.52 2.56 -24.84 -0.06 4.46 15 13 F -0.20 -3.50 17.18 2.25 0.04 -3.46 15 14 F -0.20 -3.75 17.19 2.25 0.04 -3.71 15 15 C -0.15 -2.36 6.05 -24.52 -0.15 -2.51 15 16 C 0.07 1.18 2.82 -66.19 -0.19 0.99 15 17 H 0.07 1.23 7.81 -51.92 -0.41 0.83 15 18 C 0.10 1.46 7.00 37.16 0.26 1.72 15 19 O -0.56 -8.22 12.45 -35.23 -0.44 -8.66 15 20 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.03 0.90 8.08 -51.93 -0.42 0.48 15 22 H 0.00 -0.07 7.99 -51.93 -0.41 -0.49 15 23 H 0.10 1.85 8.10 -51.93 -0.42 1.43 15 24 H 0.09 1.88 7.27 -51.93 -0.38 1.50 15 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.11 1.75 7.11 -51.93 -0.37 1.38 15 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 15 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 29 H 0.37 3.59 9.12 45.56 0.42 4.00 15 LS Contribution 254.52 15.07 3.84 3.84 Total: -1.00 -30.86 254.52 -5.25 -36.11 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -2.80 Total: 0.00 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.57 Total: -3.15 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.33 Total: -37.51 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.44 Total: -8.66 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.08 Total: -7.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.86 -5.25 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307712483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.705 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds