Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.48553 * 110.99979 * 285.41577 * 10 9 7 12 12 C 1.54383 * 104.59431 * 200.96134 * 11 10 9 13 13 F 1.39901 * 110.32308 * 264.95467 * 12 11 10 14 14 F 1.39900 * 110.40841 * 142.79423 * 12 11 10 15 15 C 1.54253 * 105.06183 * 23.85225 * 12 11 10 16 16 C 1.48559 * 111.00032 * 169.99566 * 10 9 7 17 17 H 1.09009 * 110.41217 * 40.26084 * 16 10 9 18 18 C 1.52996 * 110.41291 * 277.82000 * 16 10 9 19 19 O 1.42902 * 109.47251 * 294.99635 * 18 16 10 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 22 22 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 23 23 H 1.09007 * 110.41222 * 319.73812 * 11 10 9 24 24 H 1.09000 * 110.41194 * 82.18177 * 11 10 9 25 25 H 1.08999 * 110.32582 * 241.10413 * 15 12 11 26 26 H 1.09005 * 110.41255 * 118.93878 * 15 12 11 27 27 H 1.09004 * 109.47385 * 55.00145 * 18 16 10 28 28 H 1.09003 * 109.47421 * 174.99996 * 18 16 10 29 29 H 0.96693 * 113.99999 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 3.8305 -3.2042 1.3367 12 6 4.8312 -4.3798 1.3470 13 9 4.1914 -5.5658 0.9709 14 9 5.4062 -4.5198 2.6146 15 6 5.9074 -3.9993 0.3095 16 6 5.4664 -2.6258 -0.2405 17 1 5.9662 -1.8217 0.2999 18 6 5.7649 -2.5298 -1.7380 19 8 5.2467 -3.6842 -2.4019 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6797 -0.8895 22 1 3.8746 -0.6808 0.8905 23 1 4.0742 -2.4907 2.1240 24 1 2.8113 -3.5714 1.4573 25 1 5.9372 -4.7364 -0.4928 26 1 6.8843 -3.9202 0.7866 27 1 5.2949 -1.6347 -2.1455 28 1 6.8427 -2.4760 -1.8910 29 1 5.3997 -3.6907 -3.3566 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307712484.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -167.051275 kcal Electronic energy + Delta-G solvation = -15854.635246 eV Core-core repulsion = 12833.527058 eV Total energy + Delta-G solvation = -3021.108188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.93873 -48.05292 -39.96241 -37.07157 -34.99488 -32.70637 -30.86505 -28.79677 -26.25897 -23.89135 -22.24638 -21.36398 -18.99229 -18.72797 -18.25134 -17.87050 -16.82867 -16.52340 -15.98884 -15.61294 -15.27855 -15.11713 -14.56070 -14.41093 -14.31004 -14.25055 -13.71165 -13.62015 -13.09116 -12.68271 -12.40896 -12.29076 -11.99479 -11.83674 -11.62324 -11.43649 -10.82069 -10.73580 -9.35852 -8.29516 -6.34809 1.34669 1.37032 1.47414 2.33419 2.54307 2.89386 2.99394 3.05975 3.22765 3.53103 3.70408 4.01348 4.12315 4.40842 4.50794 4.52988 4.61244 4.71350 4.72410 4.80389 4.96713 5.07571 5.48177 5.84674 5.92297 6.50522 6.71878 7.09222 7.28469 8.87715 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.009666 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.881656 B = 2896.129826 C = 3270.969452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.240 1.240 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.029 0.971 9 C 0.163 3.837 10 N -0.500 5.500 11 C 0.009 3.991 12 C 0.279 3.721 13 F -0.203 7.203 14 F -0.199 7.199 15 C -0.139 4.139 16 C 0.045 3.955 17 H 0.087 0.913 18 C 0.095 3.905 19 O -0.579 6.579 20 H 0.267 0.733 21 H 0.043 0.957 22 H 0.001 0.999 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.713 -3.455 -1.226 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.164 1.164 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.047 0.953 9 C 0.036 3.964 10 N -0.225 5.225 11 C -0.121 4.121 12 C 0.243 3.757 13 F -0.185 7.185 14 F -0.180 7.180 15 C -0.177 4.177 16 C -0.063 4.063 17 H 0.104 0.896 18 C 0.017 3.983 19 O -0.386 6.386 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.018 0.982 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.129 0.871 26 H 0.143 0.857 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 16.080 -3.806 -1.028 16.556 hybrid contribution -0.122 1.088 0.312 1.138 sum 15.958 -2.718 -0.716 16.203 Atomic orbital electron populations 1.70070 1.08404 1.28253 1.52273 1.25939 0.95653 1.03436 0.94129 0.85656 0.79643 0.78014 0.79275 1.19139 1.16358 1.20822 1.21201 0.91190 0.93106 1.50439 0.95298 1.20180 0.94457 0.85658 0.96104 1.65318 1.13145 1.19378 1.24615 1.23838 0.99445 0.95160 0.93622 1.21866 0.91659 0.82129 0.80091 1.92982 1.83597 1.50612 1.91269 1.92981 1.85378 1.96384 1.43290 1.23262 0.97679 0.98844 0.97870 1.23036 0.89019 0.96950 0.97310 0.89570 1.22026 0.98036 0.88053 0.90171 1.86533 1.83201 1.43041 1.25872 0.92365 0.93918 0.98162 0.90756 0.90487 0.87131 0.85718 0.94072 0.89495 0.75969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 15 2 C 0.01 0.33 5.47 84.66 0.46 0.79 15 3 Si 0.95 42.51 27.47 68.60 1.88 44.39 15 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 5 H -0.24 -9.59 6.54 99.48 0.65 -8.94 15 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 7 C -0.52 -30.20 9.53 25.60 0.24 -29.96 15 8 H 0.03 1.92 8.06 -2.91 -0.02 1.89 15 9 C 0.16 7.49 3.61 85.55 0.31 7.80 15 10 N -0.50 -20.47 4.98 -861.22 -4.29 -24.76 15 11 C 0.01 0.34 5.71 86.45 0.49 0.83 15 12 C 0.28 9.30 2.70 31.49 0.08 9.38 15 13 F -0.20 -7.59 17.09 44.97 0.77 -6.83 15 14 F -0.20 -6.27 17.10 44.97 0.77 -5.50 15 15 C -0.14 -3.69 6.14 31.49 0.19 -3.49 15 16 C 0.05 1.33 2.69 45.06 0.12 1.45 15 17 H 0.09 2.21 8.00 -2.38 -0.02 2.19 15 18 C 0.10 2.38 6.91 71.98 0.50 2.88 15 19 O -0.58 -15.87 12.33 -148.98 -1.84 -17.71 15 20 H 0.27 15.58 8.31 -92.71 -0.77 14.81 15 21 H 0.04 1.89 6.16 -2.38 -0.01 1.87 15 22 H 0.00 0.03 7.19 -2.39 -0.02 0.02 15 23 H 0.07 2.75 7.73 -2.38 -0.02 2.73 15 24 H 0.08 3.43 8.12 -2.39 -0.02 3.41 15 25 H 0.11 3.01 6.76 -2.39 -0.02 2.99 15 26 H 0.12 2.43 8.05 -2.38 -0.02 2.41 15 27 H 0.04 1.13 7.19 -2.39 -0.02 1.11 15 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 29 H 0.39 6.76 9.12 -74.06 -0.68 6.09 15 Total: -1.00 -70.95 249.24 0.44 -70.51 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.43 Total: 9.54 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 2.41 Total: -10.31 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.99 Total: -84.09 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.84 Total: -17.71 kcal Atomic # 9 Polarization: -13.87 SS G_CDS: 1.54 Total: -12.33 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Total: -70.95 0.44 -70.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307712484.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.537 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds