Wall clock time and date at job start Mon Mar 30 2020 04:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47296 * 2 1 4 4 C 1.50707 * 109.46848 * 120.00177 * 2 1 3 5 5 H 1.07995 * 119.99856 * 119.99684 * 4 2 1 6 6 C 1.37879 * 119.99687 * 299.99713 * 4 2 1 7 7 N 1.31513 * 120.00090 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99706 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47370 * 59.99744 * 8 6 4 10 10 H 1.48501 * 109.47271 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47246 * 299.99819 * 8 6 4 12 12 N 1.46904 * 109.46954 * 239.99478 * 2 1 3 13 13 C 1.47964 * 110.99457 * 172.73794 * 12 2 1 14 14 C 1.53938 * 86.30036 * 222.47697 * 13 12 2 15 15 O 1.42901 * 113.73512 * 269.31082 * 14 13 12 16 16 C 1.42893 * 114.00225 * 209.99957 * 15 14 13 17 17 F 1.39899 * 109.47283 * 300.00066 * 16 15 14 18 18 F 1.39903 * 109.46857 * 60.00317 * 16 15 14 19 19 C 1.48191 * 111.06809 * 73.45436 * 12 2 1 20 20 H 1.08994 * 109.46734 * 65.94063 * 1 2 3 21 21 H 1.08999 * 109.47212 * 185.94247 * 1 2 3 22 22 H 1.09006 * 109.46718 * 305.94553 * 1 2 3 23 23 H 0.97008 * 119.99788 * 179.97438 * 7 6 4 24 24 H 1.09001 * 113.75380 * 108.10581 * 13 12 2 25 25 H 1.08995 * 113.76016 * 336.85136 * 13 12 2 26 26 H 1.08995 * 113.73630 * 138.02820 * 14 13 12 27 27 H 1.09000 * 109.47598 * 179.97438 * 16 15 14 28 28 H 1.08991 * 113.66219 * 23.13492 * 19 12 2 29 29 H 1.09003 * 113.91963 * 251.81308 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.8074 -1.1191 4.0078 10 1 1.8268 -0.4200 5.2205 11 1 1.8278 -2.5198 4.0082 12 7 2.0197 -0.6926 -1.1994 13 6 3.4884 -0.5630 -1.3240 14 6 3.2391 -0.3127 -2.8223 15 8 3.2552 -1.5018 -3.6146 16 6 3.6979 -1.2992 -4.9581 17 9 2.8487 -0.3892 -5.5967 18 9 5.0018 -0.7922 -4.9479 19 6 1.8260 0.1385 -2.4109 20 1 -0.3632 0.4189 -0.9384 21 1 -0.3633 -1.0221 0.1064 22 1 -0.3633 0.6033 0.8320 23 1 0.7081 1.1609 3.4845 24 1 4.0298 -1.4861 -1.1171 25 1 3.8994 0.2982 -0.7974 26 1 3.8502 0.4867 -3.2413 27 1 3.6819 -2.2487 -5.4931 28 1 1.7491 1.2054 -2.2018 29 1 1.0394 -0.2227 -3.0735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308160286.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:58 Heat of formation + Delta-G solvation = -120.370726 kcal Electronic energy + Delta-G solvation = -15492.346885 eV Core-core repulsion = 12473.262918 eV Total energy + Delta-G solvation = -3019.083967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.02327 -47.13728 -39.47956 -36.43330 -33.35147 -30.28627 -26.38901 -26.02878 -24.70140 -24.52708 -20.64072 -19.51536 -18.19713 -17.63874 -17.29667 -16.38512 -15.37172 -14.94714 -14.24025 -14.07246 -13.71878 -13.51792 -13.47056 -12.85893 -12.77011 -12.33038 -11.90095 -11.58071 -11.38123 -11.12535 -10.82493 -10.61599 -10.18536 -10.09496 -9.89024 -9.49861 -8.91560 -8.47362 -7.67474 -6.02586 -4.07339 3.07599 3.32160 3.36294 3.39735 3.68447 4.39973 4.50895 4.65199 4.86511 4.99201 5.20093 5.29763 5.68299 5.98896 6.13118 6.26400 6.36630 6.66547 6.82208 6.93954 7.04074 7.36282 7.43221 7.80531 8.03578 8.25117 8.47103 8.98251 9.57776 11.04614 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.054826 B = 0.006704 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.587551 B = 4175.817044 C = 4505.068979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.178 3.822 3 H 0.006 0.994 4 C -0.505 4.505 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.465 5.465 13 C 0.028 3.972 14 C 0.040 3.960 15 O -0.350 6.350 16 C 0.400 3.600 17 F -0.211 7.211 18 F -0.213 7.213 19 C -0.010 4.010 20 H 0.006 0.994 21 H 0.035 0.965 22 H 0.081 0.919 23 H 0.261 0.739 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.164 0.836 28 H 0.071 0.929 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -1.890 -12.674 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 H 0.023 0.977 4 C -0.544 4.544 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.189 5.189 13 C -0.101 4.101 14 C -0.017 4.017 15 O -0.270 6.270 16 C 0.308 3.692 17 F -0.193 7.193 18 F -0.195 7.195 19 C -0.140 4.140 20 H 0.025 0.975 21 H 0.054 0.946 22 H 0.100 0.900 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.180 0.820 28 H 0.089 0.911 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.403 -2.554 -12.390 13.395 hybrid contribution 0.644 0.763 0.801 1.280 sum 5.046 -1.792 -11.589 12.767 Atomic orbital electron populations 1.21693 0.97405 1.00503 0.98807 1.19814 0.93180 0.92400 0.87549 0.97668 1.21019 1.31275 1.12384 0.89727 0.92106 1.24933 0.95118 0.95032 0.99051 1.69896 1.36798 1.23005 1.23565 0.86561 0.79081 0.79798 0.81970 1.20303 1.21358 1.20194 1.68718 1.05390 1.41954 1.02844 1.23889 0.93959 1.02399 0.89836 1.23948 0.98623 0.86121 0.93058 1.88497 1.84927 1.33438 1.20168 1.23235 0.71888 0.89898 0.84197 1.93064 1.71643 1.72005 1.82617 1.93049 1.39990 1.90059 1.96421 1.24338 0.96030 0.97671 0.95950 0.97494 0.94578 0.90034 0.92910 0.89559 0.90099 0.90445 0.81984 0.91055 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.05 37.16 0.34 -2.82 15 2 C 0.18 4.54 1.65 -68.86 -0.11 4.42 15 3 H 0.01 0.16 7.69 -51.93 -0.40 -0.24 15 4 C -0.51 -14.02 8.21 -34.44 -0.28 -14.31 15 5 H 0.06 1.70 7.71 -52.49 -0.40 1.29 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -25.56 11.39 55.43 0.63 -24.93 15 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 15 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 12 N -0.47 -10.36 5.97 -230.92 -1.38 -11.74 15 13 C 0.03 0.55 7.12 -2.76 -0.02 0.53 15 14 C 0.04 0.67 4.00 -25.79 -0.10 0.56 15 15 O -0.35 -5.47 10.66 -35.23 -0.38 -5.84 15 16 C 0.40 4.66 6.23 101.05 0.63 5.29 15 17 F -0.21 -2.74 17.15 2.25 0.04 -2.70 15 18 F -0.21 -2.70 16.82 2.25 0.04 -2.66 15 19 C -0.01 -0.19 7.01 -2.64 -0.02 -0.21 15 20 H 0.01 0.14 7.51 -51.93 -0.39 -0.25 15 21 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.08 2.20 6.25 -51.93 -0.32 1.87 15 23 H 0.26 7.13 8.31 -40.82 -0.34 6.80 15 24 H 0.09 1.66 8.14 -51.93 -0.42 1.24 15 25 H 0.08 1.58 7.84 -51.93 -0.41 1.17 15 26 H 0.08 1.16 7.47 -51.93 -0.39 0.78 15 27 H 0.16 1.15 8.14 -51.93 -0.42 0.73 15 28 H 0.07 1.30 7.74 -51.93 -0.40 0.90 15 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 LS Contribution 254.49 15.07 3.84 3.84 Total: -1.00 -30.00 254.49 -5.44 -35.44 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -3.54 Total: -2.88 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.33 Total: -4.96 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.75 Total: -36.67 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.38 Total: -5.84 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.08 Total: -5.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.00 -5.44 -35.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160286.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.933 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds