Wall clock time and date at job start Mon Mar 30 2020 04:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47296 * 2 1 4 4 C 1.50707 * 109.46848 * 120.00177 * 2 1 3 5 5 H 1.07995 * 119.99856 * 119.99684 * 4 2 1 6 6 C 1.37879 * 119.99687 * 299.99713 * 4 2 1 7 7 N 1.31513 * 120.00090 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99706 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47370 * 59.99744 * 8 6 4 10 10 H 1.48501 * 109.47271 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47246 * 299.99819 * 8 6 4 12 12 N 1.46904 * 109.46954 * 239.99478 * 2 1 3 13 13 C 1.47964 * 110.99457 * 172.73794 * 12 2 1 14 14 C 1.53938 * 86.30036 * 222.47697 * 13 12 2 15 15 O 1.42901 * 113.73512 * 269.31082 * 14 13 12 16 16 C 1.42893 * 114.00225 * 209.99957 * 15 14 13 17 17 F 1.39899 * 109.47283 * 300.00066 * 16 15 14 18 18 F 1.39903 * 109.46857 * 60.00317 * 16 15 14 19 19 C 1.48191 * 111.06809 * 73.45436 * 12 2 1 20 20 H 1.08994 * 109.46734 * 65.94063 * 1 2 3 21 21 H 1.08999 * 109.47212 * 185.94247 * 1 2 3 22 22 H 1.09006 * 109.46718 * 305.94553 * 1 2 3 23 23 H 0.97008 * 119.99788 * 179.97438 * 7 6 4 24 24 H 1.09001 * 113.75380 * 108.10581 * 13 12 2 25 25 H 1.08995 * 113.76016 * 336.85136 * 13 12 2 26 26 H 1.08995 * 113.73630 * 138.02820 * 14 13 12 27 27 H 1.09000 * 109.47598 * 179.97438 * 16 15 14 28 28 H 1.08991 * 113.66219 * 23.13492 * 19 12 2 29 29 H 1.09003 * 113.91963 * 251.81308 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.8074 -1.1191 4.0078 10 1 1.8268 -0.4200 5.2205 11 1 1.8278 -2.5198 4.0082 12 7 2.0197 -0.6926 -1.1994 13 6 3.4884 -0.5630 -1.3240 14 6 3.2391 -0.3127 -2.8223 15 8 3.2552 -1.5018 -3.6146 16 6 3.6979 -1.2992 -4.9581 17 9 2.8487 -0.3892 -5.5967 18 9 5.0018 -0.7922 -4.9479 19 6 1.8260 0.1385 -2.4109 20 1 -0.3632 0.4189 -0.9384 21 1 -0.3633 -1.0221 0.1064 22 1 -0.3633 0.6033 0.8320 23 1 0.7081 1.1609 3.4845 24 1 4.0298 -1.4861 -1.1171 25 1 3.8994 0.2982 -0.7974 26 1 3.8502 0.4867 -3.2413 27 1 3.6819 -2.2487 -5.4931 28 1 1.7491 1.2054 -2.2018 29 1 1.0394 -0.2227 -3.0735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308160286.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:58 Heat of formation + Delta-G solvation = -142.331290 kcal Electronic energy + Delta-G solvation = -15493.299166 eV Core-core repulsion = 12473.262918 eV Total energy + Delta-G solvation = -3020.036249 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.97698 -48.09623 -40.99581 -37.79384 -35.32831 -32.23618 -28.00618 -27.62961 -26.39424 -25.92423 -22.37415 -21.02764 -19.33813 -18.64464 -18.39941 -18.36423 -17.13011 -16.39892 -15.92001 -15.45000 -15.09307 -14.93821 -14.49740 -14.28731 -14.20750 -13.95405 -13.36396 -13.05634 -12.97100 -12.85914 -12.74159 -12.45733 -12.19593 -12.01441 -11.37841 -11.15644 -10.93644 -10.56449 -9.44167 -8.13808 -6.25975 1.41785 1.43771 1.51427 2.01499 2.41429 2.74318 3.13663 3.25394 3.35047 3.78111 3.84371 3.96787 4.26455 4.50484 4.60939 4.69939 4.77671 4.82844 4.97907 5.03425 5.39862 5.43905 5.64379 5.70888 6.04009 6.25030 6.50934 6.85669 7.43111 8.92339 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.054826 B = 0.006704 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.587551 B = 4175.817044 C = 4505.068979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.182 3.818 3 H -0.019 1.019 4 C -0.523 4.523 5 H 0.053 0.947 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.486 5.486 13 C 0.022 3.978 14 C 0.063 3.937 15 O -0.366 6.366 16 C 0.398 3.602 17 F -0.219 7.219 18 F -0.219 7.219 19 C -0.011 4.011 20 H 0.028 0.972 21 H 0.025 0.975 22 H 0.058 0.942 23 H 0.263 0.737 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.215 0.785 28 H 0.074 0.926 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -2.601 -13.605 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.074 3.926 3 H -0.002 1.002 4 C -0.562 4.562 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.209 5.209 13 C -0.107 4.107 14 C 0.005 3.995 15 O -0.287 6.287 16 C 0.307 3.693 17 F -0.201 7.201 18 F -0.201 7.201 19 C -0.140 4.140 20 H 0.047 0.953 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.231 0.769 28 H 0.092 0.908 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.097 -3.268 -13.344 14.653 hybrid contribution 0.440 0.979 1.003 1.469 sum 5.537 -2.290 -12.340 13.718 Atomic orbital electron populations 1.21524 0.97361 0.99427 0.99010 1.19624 0.93199 0.91081 0.88664 1.00192 1.21276 1.31465 1.12351 0.91088 0.92916 1.25704 0.95238 0.95702 1.01888 1.70013 1.37531 1.24073 1.24223 0.85573 0.78816 0.78598 0.78414 1.19495 1.20801 1.19924 1.68637 1.07229 1.42485 1.02592 1.23889 0.92284 1.02124 0.92380 1.23572 0.97132 0.87003 0.91793 1.88475 1.85225 1.32942 1.22093 1.24001 0.71060 0.91595 0.82618 1.93052 1.71922 1.72608 1.82487 1.93040 1.40410 1.90331 1.96304 1.24391 0.97799 0.97437 0.94414 0.95285 0.95577 0.92273 0.92830 0.89724 0.90713 0.88353 0.76873 0.90808 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.81 9.05 71.98 0.65 -5.16 15 2 C 0.18 9.41 1.65 44.17 0.07 9.49 15 3 H -0.02 -1.08 7.69 -2.39 -0.02 -1.10 15 4 C -0.52 -29.34 8.21 25.60 0.21 -29.13 15 5 H 0.05 2.97 7.71 -2.91 -0.02 2.95 15 6 C 0.01 0.76 5.30 84.66 0.45 1.21 15 7 N -0.92 -53.09 11.39 21.45 0.24 -52.85 15 8 Si 0.96 43.99 29.54 68.60 2.03 46.01 15 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 12 N -0.49 -21.49 5.97 -887.33 -5.30 -26.79 15 13 C 0.02 0.86 7.12 86.41 0.62 1.47 15 14 C 0.06 1.98 4.00 31.24 0.12 2.11 15 15 O -0.37 -10.53 10.66 -148.98 -1.59 -12.12 15 16 C 0.40 7.97 6.23 113.37 0.71 8.68 15 17 F -0.22 -5.05 17.15 44.97 0.77 -4.28 15 18 F -0.22 -4.92 16.82 44.97 0.76 -4.17 15 19 C -0.01 -0.41 7.01 86.36 0.61 0.20 15 20 H 0.03 1.28 7.51 -2.39 -0.02 1.26 15 21 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 22 H 0.06 3.24 6.25 -2.38 -0.01 3.22 15 23 H 0.26 14.43 8.31 -92.70 -0.77 13.66 15 24 H 0.08 3.22 8.14 -2.39 -0.02 3.20 15 25 H 0.07 2.94 7.84 -2.39 -0.02 2.92 15 26 H 0.10 2.72 7.47 -2.39 -0.02 2.70 15 27 H 0.22 2.07 8.14 -2.39 -0.02 2.05 15 28 H 0.07 2.62 7.74 -2.39 -0.02 2.60 15 29 H 0.09 3.12 8.14 -2.39 -0.02 3.10 15 Total: -1.00 -63.74 254.49 1.49 -62.25 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.14 Total: 3.06 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.44 Total: -11.13 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -5.06 Total: -79.64 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.59 Total: -12.12 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 1.53 Total: -8.45 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.74 1.49 -62.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160286.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.078 kcal (2) G-P(sol) polarization free energy of solvation -63.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds