Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47136 * 2 1 4 4 C 1.50698 * 109.47077 * 240.00084 * 2 1 3 5 5 H 1.08004 * 120.00255 * 245.55639 * 4 2 1 6 6 C 1.37882 * 120.00030 * 65.27453 * 4 2 1 7 7 N 1.31512 * 119.99747 * 355.45090 * 6 4 2 8 8 Si 1.86797 * 119.99833 * 175.44932 * 6 4 2 9 9 H 1.48503 * 109.47277 * 95.00276 * 8 6 4 10 10 H 1.48503 * 109.46915 * 215.00444 * 8 6 4 11 11 H 1.48504 * 109.47276 * 335.00151 * 8 6 4 12 12 N 1.46899 * 109.46976 * 120.00183 * 2 1 3 13 13 C 1.47483 * 111.00144 * 271.31216 * 12 2 1 14 14 C 1.53505 * 87.93273 * 221.29560 * 13 12 2 15 15 O 1.42904 * 114.17062 * 139.66592 * 14 13 12 16 16 C 1.42905 * 113.99726 * 116.15960 * 15 14 13 17 17 F 1.39899 * 109.47089 * 300.00224 * 16 15 14 18 18 F 1.39900 * 109.47039 * 60.00153 * 16 15 14 19 19 C 1.47477 * 110.99842 * 175.33938 * 12 2 1 20 20 H 1.08996 * 109.47408 * 304.95538 * 1 2 3 21 21 H 1.09007 * 109.47006 * 64.95037 * 1 2 3 22 22 H 1.09004 * 109.47401 * 184.94923 * 1 2 3 23 23 H 0.97002 * 119.99521 * 179.97438 * 7 6 4 24 24 H 1.08996 * 113.47261 * 336.06718 * 13 12 2 25 25 H 1.09003 * 113.47685 * 106.52645 * 13 12 2 26 26 H 1.08995 * 114.17193 * 272.37645 * 14 13 12 27 27 H 1.09000 * 109.46756 * 180.02562 * 16 15 14 28 28 H 1.08993 * 113.47902 * 253.46569 * 19 12 2 29 29 H 1.08996 * 113.47442 * 23.88087 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5773 -1.6379 -1.1340 6 6 1.7912 -0.1793 -2.4798 7 7 1.0473 0.8981 -2.6039 8 14 2.5214 -0.9901 -3.9961 9 1 1.5257 -1.9190 -4.5887 10 1 2.8792 0.0526 -4.9911 11 1 3.7397 -1.7483 -3.6138 12 7 2.0196 -0.6925 1.1994 13 6 2.1661 0.2451 2.3284 14 6 3.4824 -0.4647 2.6747 15 8 4.5336 0.4158 3.0770 16 6 4.9664 0.2262 4.4257 17 9 3.8917 0.4420 5.2950 18 9 5.4393 -1.0809 4.5843 19 6 3.4896 -0.8098 1.1789 20 1 -0.3634 0.5888 0.8422 21 1 -0.3633 0.4351 -0.9311 22 1 -0.3634 -1.0238 0.0887 23 1 0.8780 1.2719 -3.4829 24 1 2.3001 1.2812 2.0176 25 1 1.3965 0.1294 3.0915 26 1 3.3653 -1.3269 3.3312 27 1 5.7651 0.9321 4.6536 28 1 3.8417 -1.8195 0.9680 29 1 3.9767 -0.0558 0.5606 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308160288.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -121.321552 kcal Electronic energy + Delta-G solvation = -15477.765943 eV Core-core repulsion = 12458.640745 eV Total energy + Delta-G solvation = -3019.125198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.01794 -47.13394 -39.62403 -36.59268 -33.42183 -30.38833 -26.51725 -25.95674 -24.59798 -24.47618 -20.60618 -19.47991 -18.32226 -17.63718 -17.47596 -16.34224 -15.41944 -14.92998 -14.34077 -14.15319 -13.77052 -13.50356 -13.26014 -12.86606 -12.58008 -12.27312 -11.96794 -11.83018 -11.38453 -11.05770 -10.87398 -10.65350 -10.27699 -10.13963 -9.77804 -9.57154 -8.90575 -8.50649 -7.88554 -6.06864 -4.12448 3.12056 3.28051 3.34942 3.38797 3.70759 4.37841 4.51811 4.66338 4.94239 4.98817 5.21344 5.26502 5.68688 6.07151 6.16445 6.27940 6.40396 6.57952 6.83630 6.93621 7.05347 7.28573 7.40530 7.75895 7.99612 8.19491 8.39236 8.93820 9.53125 11.00279 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.047716 B = 0.006919 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.669591 B = 4046.113006 C = 4402.833099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.180 3.820 3 H 0.014 0.986 4 C -0.512 4.512 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.465 5.465 13 C -0.012 4.012 14 C 0.034 3.966 15 O -0.372 6.372 16 C 0.402 3.598 17 F -0.211 7.211 18 F -0.212 7.212 19 C 0.030 3.970 20 H 0.007 0.993 21 H 0.082 0.918 22 H 0.033 0.967 23 H 0.261 0.739 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.162 0.838 28 H 0.080 0.920 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 -0.061 11.505 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 H 0.031 0.969 4 C -0.551 4.551 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.190 5.190 13 C -0.141 4.141 14 C -0.023 4.023 15 O -0.292 6.292 16 C 0.310 3.690 17 F -0.193 7.193 18 F -0.194 7.194 19 C -0.099 4.099 20 H 0.026 0.974 21 H 0.100 0.900 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.178 0.822 28 H 0.099 0.901 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.263 -0.407 11.277 12.906 hybrid contribution 0.594 0.176 -0.811 1.021 sum 6.857 -0.231 10.466 12.514 Atomic orbital electron populations 1.21668 0.97345 0.98941 1.00316 1.19844 0.93264 0.92817 0.86752 0.96876 1.21118 1.35373 1.08502 0.90097 0.91983 1.24941 0.94982 0.95080 0.99057 1.69916 1.37358 1.21879 1.23704 0.86500 0.79540 0.79002 0.82502 1.20695 1.21183 1.19787 1.68969 1.10056 1.33732 1.06273 1.24291 0.95341 0.97392 0.97077 1.24367 0.86649 0.92867 0.98406 1.88492 1.55026 1.59810 1.25912 1.23119 0.85538 0.81506 0.78855 1.93066 1.60250 1.94676 1.71300 1.93053 1.88491 1.42453 1.95389 1.23749 0.92610 1.02378 0.91151 0.97435 0.89956 0.94738 0.92870 0.90996 0.90457 0.87878 0.82168 0.90140 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.35 37.16 0.35 -2.75 15 2 C 0.18 4.59 1.77 -68.87 -0.12 4.47 15 3 H 0.01 0.37 7.41 -51.93 -0.38 -0.01 15 4 C -0.51 -14.04 7.80 -34.44 -0.27 -14.31 15 5 H 0.06 1.70 7.38 -52.48 -0.39 1.31 15 6 C 0.06 1.69 5.35 -17.82 -0.10 1.59 15 7 N -0.89 -25.35 11.52 55.43 0.64 -24.71 15 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 12 N -0.47 -10.26 6.16 -238.02 -1.47 -11.72 15 13 C -0.01 -0.22 7.51 -7.54 -0.06 -0.27 15 14 C 0.03 0.58 4.14 -26.20 -0.11 0.47 15 15 O -0.37 -5.66 10.69 -35.23 -0.38 -6.04 15 16 C 0.40 4.66 6.23 101.05 0.63 5.28 15 17 F -0.21 -2.74 17.15 2.25 0.04 -2.70 15 18 F -0.21 -2.72 16.84 2.25 0.04 -2.68 15 19 C 0.03 0.60 6.33 -7.54 -0.05 0.55 15 20 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 15 21 H 0.08 2.22 6.23 -51.93 -0.32 1.90 15 22 H 0.03 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 24 H 0.07 1.40 7.48 -51.93 -0.39 1.02 15 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 26 H 0.10 1.65 7.51 -51.93 -0.39 1.26 15 27 H 0.16 1.11 8.14 -51.93 -0.42 0.69 15 28 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 29 H 0.08 1.72 7.79 -51.93 -0.40 1.32 15 LS Contribution 254.50 15.07 3.84 3.84 Total: -1.00 -29.33 254.50 -5.56 -34.89 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -3.53 Total: -2.12 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.28 Total: -4.97 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.83 Total: -36.43 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.38 Total: -6.04 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.08 Total: -5.38 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.33 -5.56 -34.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160288.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.428 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds