Wall clock time and date at job start Mon Mar 30 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29431 * 120.00231 * 2 1 4 4 O 1.41599 * 119.99543 * 0.02562 * 3 2 1 5 5 C 1.47443 * 120.00011 * 180.02562 * 2 1 3 6 6 C 1.39629 * 120.19533 * 359.97438 * 5 2 1 7 7 C 1.37888 * 119.91999 * 180.02562 * 6 5 2 8 8 C 1.38527 * 120.30754 * 359.97438 * 7 6 5 9 9 C 1.38088 * 120.39772 * 0.02562 * 8 7 6 10 10 C 1.38762 * 120.07485 * 0.02562 * 9 8 7 11 11 O 1.35592 * 120.15243 * 180.02562 * 10 9 8 12 12 C 1.34808 * 117.00242 * 354.39921 * 11 10 9 13 13 H 1.07997 * 120.00013 * 5.06811 * 12 11 10 14 14 C 1.38666 * 119.99774 * 185.06408 * 12 11 10 15 15 N 1.31537 * 120.00590 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99656 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47101 * 90.00015 * 16 14 12 18 18 H 1.48494 * 109.47338 * 209.99996 * 16 14 12 19 19 H 1.48498 * 109.47644 * 330.00268 * 16 14 12 20 20 H 1.08996 * 109.47115 * 269.99624 * 1 2 3 21 21 H 1.08999 * 109.47436 * 29.99611 * 1 2 3 22 22 H 1.09006 * 109.46818 * 149.99761 * 1 2 3 23 23 H 0.96701 * 113.99492 * 179.97438 * 4 3 2 24 24 H 1.08005 * 120.03674 * 0.02562 * 6 5 2 25 25 H 1.07997 * 119.84619 * 180.02562 * 7 6 5 26 26 H 1.08005 * 119.79518 * 179.74754 * 8 7 6 27 27 H 1.07996 * 119.96147 * 179.97438 * 9 8 7 28 28 H 0.96995 * 120.00269 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1542 1.1209 0.0000 4 8 1.4461 2.3471 0.0005 5 6 2.2442 -1.2769 -0.0006 6 6 1.5502 -2.4885 -0.0006 7 6 2.2454 -3.6793 -0.0006 8 6 3.6306 -3.6801 -0.0011 9 6 4.3300 -2.4894 -0.0011 10 6 3.6468 -1.2816 0.0000 11 8 4.3320 -0.1116 -0.0006 12 6 5.6730 -0.1875 0.1151 13 1 6.1608 -1.1509 0.1203 14 6 6.4258 0.9716 0.2273 15 7 5.8317 2.1451 0.2213 16 14 8.2839 0.8663 0.3882 17 1 8.9001 0.8929 -0.9627 18 1 8.7783 2.0208 1.1805 19 1 8.6506 -0.3984 1.0746 20 1 -0.3633 -0.0001 1.0276 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 2.0146 3.1294 0.0009 24 1 0.4701 -2.4929 -0.0006 25 1 1.7074 -4.6157 -0.0010 26 1 4.1668 -4.6176 0.0030 27 1 5.4099 -2.4982 -0.0011 28 1 6.3584 2.9558 0.2994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308165488.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:00 Heat of formation + Delta-G solvation = -12.321962 kcal Electronic energy + Delta-G solvation = -14662.835000 eV Core-core repulsion = 12066.832813 eV Total energy + Delta-G solvation = -2596.002186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = -0.17 seconds Orbital eigenvalues (eV) -40.80372 -38.36925 -37.66925 -34.98580 -34.23575 -31.20069 -30.33086 -29.02299 -27.22606 -24.19136 -22.92846 -20.72574 -19.76106 -18.60590 -17.62601 -16.80325 -16.35247 -16.10175 -15.68314 -15.58456 -14.97669 -14.87441 -14.48941 -14.19087 -13.51217 -13.42678 -13.02927 -12.90163 -12.52852 -12.39417 -12.21531 -12.08311 -11.24455 -10.94745 -10.75123 -10.41398 -9.44904 -8.83135 -8.40201 -6.06685 0.14068 0.80160 1.35307 1.44786 1.51748 1.68129 2.18432 2.42915 2.91051 3.26791 3.54254 3.70453 4.22357 4.27354 4.37731 4.55736 4.65938 4.72470 4.83289 5.02296 5.15207 5.20211 5.34515 5.59169 5.72879 5.78644 6.00308 6.11715 6.25558 7.01446 7.09379 7.86537 8.79574 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.011223 C = 0.007756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.961342 B = 2494.243493 C = 3609.449420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.142 3.858 3 N -0.338 5.338 4 O -0.431 6.431 5 C -0.158 4.158 6 C -0.037 4.037 7 C -0.198 4.198 8 C -0.053 4.053 9 C -0.258 4.258 10 C 0.130 3.870 11 O -0.179 6.179 12 C -0.425 4.425 13 H 0.099 0.901 14 C -0.015 4.015 15 N -0.895 5.895 16 Si 1.014 2.986 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.255 1.255 20 H 0.088 0.912 21 H 0.065 0.935 22 H 0.105 0.895 23 H 0.408 0.592 24 H 0.163 0.837 25 H 0.161 0.839 26 H 0.148 0.852 27 H 0.119 0.881 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -8.956 -0.056 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.046 4.046 3 N -0.083 5.083 4 O -0.339 6.339 5 C -0.161 4.161 6 C -0.057 4.057 7 C -0.216 4.216 8 C -0.072 4.072 9 C -0.278 4.278 10 C 0.075 3.925 11 O -0.081 6.081 12 C -0.502 4.502 13 H 0.116 0.884 14 C -0.215 4.215 15 N -0.531 5.531 16 Si 0.834 3.166 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.178 1.178 20 H 0.107 0.893 21 H 0.084 0.916 22 H 0.124 0.876 23 H 0.257 0.743 24 H 0.180 0.820 25 H 0.179 0.821 26 H 0.166 0.834 27 H 0.137 0.863 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.110 -8.356 -0.058 10.352 hybrid contribution 0.755 0.897 0.051 1.173 sum -5.355 -7.459 -0.007 9.183 Atomic orbital electron populations 1.21202 0.89128 1.04418 1.04072 1.23677 0.95936 0.90855 0.94111 1.77609 1.22642 0.92025 1.16024 1.88091 1.36004 1.14204 1.95626 1.17877 0.89043 0.91950 1.17277 1.21291 1.00719 0.89297 0.94412 1.21139 0.93651 0.98469 1.08344 1.21360 0.95158 0.96789 0.93868 1.21285 1.00655 0.92631 1.13194 1.20206 0.92291 0.87232 0.92804 1.84155 1.20044 1.25923 1.77949 1.21911 0.79829 0.95476 1.52950 0.88420 1.26482 1.05512 0.93632 0.95873 1.70238 1.37969 0.98118 1.46798 0.84662 0.74182 0.78855 0.78949 1.19038 1.19775 1.17846 0.89309 0.91569 0.87626 0.74276 0.81981 0.82149 0.83410 0.86339 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.28 71.24 0.66 -3.31 15 2 C 0.14 6.12 7.11 45.34 0.32 6.45 15 3 N -0.34 -17.21 9.98 -42.99 -0.43 -17.64 15 4 O -0.43 -18.95 13.74 -38.78 -0.53 -19.48 15 5 C -0.16 -6.75 5.88 -20.02 -0.12 -6.87 15 6 C -0.04 -1.16 9.36 22.52 0.21 -0.94 15 7 C -0.20 -5.45 10.03 22.26 0.22 -5.22 15 8 C -0.05 -1.69 10.03 22.30 0.22 -1.47 15 9 C -0.26 -11.08 9.16 22.36 0.20 -10.88 15 10 C 0.13 6.53 6.66 22.89 0.15 6.68 15 11 O -0.18 -10.72 7.64 -20.78 -0.16 -10.88 15 12 C -0.43 -24.88 9.49 67.92 0.64 -24.23 15 13 H 0.10 5.26 5.21 -2.91 -0.02 5.24 15 14 C -0.02 -0.86 5.49 84.84 0.47 -0.39 15 15 N -0.90 -54.47 13.67 21.61 0.30 -54.17 15 16 Si 1.01 43.12 29.55 68.60 2.03 45.15 15 17 H -0.27 -10.78 7.11 99.48 0.71 -10.08 15 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 19 H -0.25 -10.11 7.11 99.48 0.71 -9.40 15 20 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 21 H 0.07 2.10 7.35 -2.39 -0.02 2.08 15 22 H 0.11 2.43 6.48 -2.38 -0.02 2.41 15 23 H 0.41 15.88 9.28 -74.06 -0.69 15.20 15 24 H 0.16 3.54 6.36 -2.91 -0.02 3.52 15 25 H 0.16 2.96 8.06 -2.91 -0.02 2.94 15 26 H 0.15 3.56 8.06 -2.91 -0.02 3.54 15 27 H 0.12 5.19 5.64 -2.91 -0.02 5.18 15 28 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 Total: -1.00 -75.10 251.26 4.71 -70.39 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.51 Total: 26.82 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 2.99 Total: -40.19 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -0.13 Total: -71.81 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.69 Total: -30.36 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.10 4.71 -70.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165488.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.071 kcal (2) G-P(sol) polarization free energy of solvation -75.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.17 seconds