Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29415 * 120.00166 * 2 1 4 4 O 1.41601 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.47495 * 120.00194 * 179.97438 * 2 1 3 6 6 C 1.39753 * 120.08034 * 180.02562 * 5 2 1 7 7 C 1.37718 * 119.91792 * 180.02562 * 6 5 2 8 8 C 1.39071 * 120.08557 * 359.97438 * 7 6 5 9 9 O 1.35635 * 119.92472 * 180.02562 * 8 7 6 10 10 C 1.34810 * 117.00114 * 5.55101 * 9 8 7 11 11 H 1.08005 * 119.99407 * 354.94821 * 10 9 8 12 12 C 1.38660 * 120.00405 * 174.94588 * 10 9 8 13 13 N 1.31549 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00353 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46825 * 89.99917 * 14 12 10 16 16 H 1.48495 * 109.47239 * 209.99638 * 14 12 10 17 17 H 1.48501 * 109.46645 * 330.00028 * 14 12 10 18 18 C 1.39077 * 120.15629 * 0.27498 * 8 7 6 19 19 C 1.37722 * 120.08376 * 359.45146 * 18 8 7 20 20 H 1.09003 * 109.47134 * 269.99542 * 1 2 3 21 21 H 1.08992 * 109.47471 * 29.99997 * 1 2 3 22 22 H 1.09005 * 109.47057 * 150.00126 * 1 2 3 23 23 H 0.96699 * 114.00633 * 180.02562 * 4 3 2 24 24 H 1.08005 * 120.04032 * 0.02562 * 6 5 2 25 25 H 1.08001 * 119.95850 * 179.97438 * 7 6 5 26 26 H 0.96997 * 120.00558 * 179.97438 * 13 12 10 27 27 H 1.08003 * 119.95831 * 179.70147 * 18 8 7 28 28 H 1.08002 * 120.04690 * 180.25049 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2445 -1.2773 0.0006 6 6 3.6420 -1.2792 0.0011 7 6 4.3272 -2.4738 0.0011 8 6 3.6303 -3.6773 0.0011 9 8 4.3085 -4.8519 0.0016 10 6 5.6498 -4.7842 0.1183 11 1 6.1435 -3.8236 0.1238 12 6 6.3956 -5.9477 0.2314 13 7 5.7943 -7.1177 0.2253 14 14 8.2542 -5.8537 0.3938 15 1 8.6221 -5.7733 1.8303 16 1 8.8655 -7.0666 -0.2064 17 1 8.7524 -4.6466 -0.3132 18 6 2.2395 -3.6793 -0.0047 19 6 1.5475 -2.4886 0.0010 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 2.0143 3.1294 0.0001 24 1 4.1839 -0.3450 0.0015 25 1 5.4072 -2.4761 0.0011 26 1 6.3160 -7.9316 0.3040 27 1 1.7015 -4.6158 -0.0095 28 1 0.4674 -2.4909 0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308166372.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = 0.427367 kcal Electronic energy + Delta-G solvation = -13999.330263 eV Core-core repulsion = 11403.880929 eV Total energy + Delta-G solvation = -2595.449334 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20348 -37.48816 -36.13919 -33.55228 -32.33930 -30.50011 -28.55666 -27.85962 -25.51983 -22.30869 -21.84575 -19.36335 -18.08030 -17.03134 -16.59703 -15.70286 -14.73325 -14.42850 -14.19069 -14.02301 -13.75867 -13.67117 -12.90655 -12.57074 -12.40961 -12.06178 -11.78229 -11.52039 -11.09631 -11.04268 -10.74479 -10.52084 -9.67872 -9.55781 -9.36820 -8.86746 -8.32635 -7.20792 -6.60049 -4.16430 1.48885 2.16870 2.90387 3.07361 3.10989 3.12615 3.40459 3.86260 4.52182 4.85895 4.97226 5.12655 5.35931 5.52836 5.64499 5.64653 5.86638 6.08917 6.16612 6.29390 6.53106 6.76404 6.90208 6.94540 7.20011 7.25192 7.31469 7.65843 7.85429 8.04219 8.85085 9.51831 10.56846 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.055370 B = 0.005856 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.570539 B = 4779.926278 C = 5266.902218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.200 3.800 3 N -0.367 5.367 4 O -0.427 6.427 5 C -0.169 4.169 6 C -0.023 4.023 7 C -0.244 4.244 8 C 0.168 3.832 9 O -0.165 6.165 10 C -0.393 4.393 11 H 0.097 0.903 12 C 0.042 3.958 13 N -0.855 5.855 14 Si 0.944 3.056 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.266 1.266 18 C -0.197 4.197 19 C -0.040 4.040 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.395 0.605 24 H 0.118 0.882 25 H 0.131 0.869 26 H 0.273 0.727 27 H 0.123 0.877 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 9.565 -0.121 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 N -0.114 5.114 4 O -0.331 6.331 5 C -0.172 4.172 6 C -0.043 4.043 7 C -0.263 4.263 8 C 0.112 3.888 9 O -0.066 6.066 10 C -0.469 4.469 11 H 0.114 0.886 12 C -0.164 4.164 13 N -0.488 5.488 14 Si 0.768 3.232 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.190 1.190 18 C -0.216 4.216 19 C -0.061 4.061 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.242 0.758 24 H 0.136 0.864 25 H 0.149 0.851 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.770 9.144 -0.130 10.315 hybrid contribution 0.539 0.442 0.091 0.703 sum -4.231 9.586 -0.039 10.479 Atomic orbital electron populations 1.21251 0.92547 1.03541 1.03235 1.23224 0.93887 0.91119 0.90356 1.76703 1.22870 0.91175 1.20691 1.88326 1.35116 1.13607 1.96076 1.17698 0.92737 0.88893 1.17902 1.20934 0.92741 0.97304 0.93369 1.21119 1.00843 0.91738 1.12596 1.19576 0.91722 0.86390 0.91141 1.83929 1.21297 1.25255 1.76131 1.21451 0.78340 0.95021 1.52069 0.88595 1.25365 1.00881 0.94093 0.96086 1.70029 1.36734 0.97638 1.44402 0.85661 0.80017 0.78538 0.78987 1.19674 1.20109 1.18984 1.20106 0.91393 0.98045 1.12105 1.20725 0.98554 0.90630 0.96147 0.90314 0.90870 0.90349 0.75817 0.86390 0.85096 0.91694 0.85884 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.27 36.00 0.33 -1.58 15 2 C 0.20 3.29 7.11 -79.84 -0.57 2.73 15 3 N -0.37 -6.18 11.23 35.07 0.39 -5.79 15 4 O -0.43 -6.09 13.73 -11.47 -0.16 -6.24 15 5 C -0.17 -3.04 5.87 -104.99 -0.62 -3.66 15 6 C -0.02 -0.45 9.57 -39.21 -0.38 -0.82 15 7 C -0.24 -5.20 9.15 -39.46 -0.36 -5.56 15 8 C 0.17 3.91 6.65 -38.96 -0.26 3.65 15 9 O -0.17 -4.52 9.75 0.46 0.00 -4.52 15 10 C -0.39 -10.57 9.48 30.89 0.29 -10.27 15 11 H 0.10 2.38 5.19 -52.48 -0.27 2.11 15 12 C 0.04 1.10 5.49 -17.52 -0.10 1.00 15 13 N -0.85 -24.14 13.67 55.48 0.76 -23.38 15 14 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 15 15 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15 16 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 17 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 18 C -0.20 -3.93 9.97 -39.46 -0.39 -4.33 15 19 C -0.04 -0.69 9.35 -39.20 -0.37 -1.06 15 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.07 0.95 7.35 -51.93 -0.38 0.57 15 22 H 0.08 0.89 6.47 -51.93 -0.34 0.55 15 23 H 0.40 3.73 9.28 45.56 0.42 4.16 15 24 H 0.12 2.11 7.55 -52.48 -0.40 1.71 15 25 H 0.13 2.77 5.62 -52.49 -0.29 2.47 15 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 27 H 0.12 2.31 8.06 -52.48 -0.42 1.89 15 28 H 0.12 1.63 6.35 -52.49 -0.33 1.30 15 LS Contribution 253.50 15.07 3.82 3.82 Total: -1.00 -30.46 253.50 -4.18 -34.65 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -1.57 Total: 6.62 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.41 Total: -19.91 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 1.15 Total: -29.16 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.15 Total: -10.76 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.46 -4.18 -34.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308166372.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.074 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds