Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29415 * 120.00166 * 2 1 4 4 O 1.41601 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.47495 * 120.00194 * 179.97438 * 2 1 3 6 6 C 1.39753 * 120.08034 * 180.02562 * 5 2 1 7 7 C 1.37718 * 119.91792 * 180.02562 * 6 5 2 8 8 C 1.39071 * 120.08557 * 359.97438 * 7 6 5 9 9 O 1.35635 * 119.92472 * 180.02562 * 8 7 6 10 10 C 1.34810 * 117.00114 * 5.55101 * 9 8 7 11 11 H 1.08005 * 119.99407 * 354.94821 * 10 9 8 12 12 C 1.38660 * 120.00405 * 174.94588 * 10 9 8 13 13 N 1.31549 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00353 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46825 * 89.99917 * 14 12 10 16 16 H 1.48495 * 109.47239 * 209.99638 * 14 12 10 17 17 H 1.48501 * 109.46645 * 330.00028 * 14 12 10 18 18 C 1.39077 * 120.15629 * 0.27498 * 8 7 6 19 19 C 1.37722 * 120.08376 * 359.45146 * 18 8 7 20 20 H 1.09003 * 109.47134 * 269.99542 * 1 2 3 21 21 H 1.08992 * 109.47471 * 29.99997 * 1 2 3 22 22 H 1.09005 * 109.47057 * 150.00126 * 1 2 3 23 23 H 0.96699 * 114.00633 * 180.02562 * 4 3 2 24 24 H 1.08005 * 120.04032 * 0.02562 * 6 5 2 25 25 H 1.08001 * 119.95850 * 179.97438 * 7 6 5 26 26 H 0.96997 * 120.00558 * 179.97438 * 13 12 10 27 27 H 1.08003 * 119.95831 * 179.70147 * 18 8 7 28 28 H 1.08002 * 120.04690 * 180.25049 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2445 -1.2773 0.0006 6 6 3.6420 -1.2792 0.0011 7 6 4.3272 -2.4738 0.0011 8 6 3.6303 -3.6773 0.0011 9 8 4.3085 -4.8519 0.0016 10 6 5.6498 -4.7842 0.1183 11 1 6.1435 -3.8236 0.1238 12 6 6.3956 -5.9477 0.2314 13 7 5.7943 -7.1177 0.2253 14 14 8.2542 -5.8537 0.3938 15 1 8.6221 -5.7733 1.8303 16 1 8.8655 -7.0666 -0.2064 17 1 8.7524 -4.6466 -0.3132 18 6 2.2395 -3.6793 -0.0047 19 6 1.5475 -2.4886 0.0010 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 2.0143 3.1294 0.0001 24 1 4.1839 -0.3450 0.0015 25 1 5.4072 -2.4761 0.0011 26 1 6.3160 -7.9316 0.3040 27 1 1.7015 -4.6158 -0.0095 28 1 0.4674 -2.4909 0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308166372.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = -20.957322 kcal Electronic energy + Delta-G solvation = -14000.257572 eV Core-core repulsion = 11403.880929 eV Total energy + Delta-G solvation = -2596.376643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.87364 -38.98734 -37.55349 -34.91616 -34.16302 -32.05542 -30.11449 -29.02167 -27.41102 -23.85727 -23.44415 -20.83430 -19.80562 -18.81777 -17.81537 -17.07598 -16.42246 -16.08497 -15.65785 -15.49545 -15.25505 -15.09113 -14.54598 -14.16744 -13.57400 -13.47692 -13.23505 -13.09130 -12.62277 -12.59282 -12.32089 -12.12484 -11.30039 -11.02391 -10.77128 -10.56986 -9.88247 -8.85750 -8.51252 -6.18184 0.03093 0.57972 1.36492 1.39063 1.53378 1.57096 2.16081 2.24230 2.83652 3.15713 3.42177 3.65303 4.08480 4.11727 4.29202 4.47728 4.65755 4.68980 4.74795 5.00837 5.05249 5.13188 5.24952 5.50627 5.58644 5.64404 5.97689 6.03331 6.07112 6.92757 6.93627 7.69331 8.70820 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.055370 B = 0.005856 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.570539 B = 4779.926278 C = 5266.902218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.187 3.813 3 N -0.381 5.381 4 O -0.419 6.419 5 C -0.151 4.151 6 C -0.030 4.030 7 C -0.250 4.250 8 C 0.135 3.865 9 O -0.218 6.218 10 C -0.417 4.417 11 H 0.104 0.896 12 C -0.017 4.017 13 N -0.913 5.913 14 Si 1.017 2.983 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.253 1.253 18 C -0.202 4.202 19 C -0.025 4.025 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.098 0.902 23 H 0.415 0.585 24 H 0.131 0.869 25 H 0.124 0.876 26 H 0.275 0.725 27 H 0.131 0.869 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 12.108 -0.053 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 N -0.125 5.125 4 O -0.330 6.330 5 C -0.153 4.153 6 C -0.050 4.050 7 C -0.269 4.269 8 C 0.082 3.918 9 O -0.122 6.122 10 C -0.493 4.493 11 H 0.121 0.879 12 C -0.216 4.216 13 N -0.550 5.550 14 Si 0.836 3.164 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.177 1.177 18 C -0.221 4.221 19 C -0.044 4.044 20 H 0.111 0.889 21 H 0.094 0.906 22 H 0.117 0.883 23 H 0.266 0.734 24 H 0.149 0.851 25 H 0.141 0.859 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.069 11.751 -0.065 13.226 hybrid contribution 0.632 0.107 0.057 0.643 sum -5.437 11.859 -0.008 13.046 Atomic orbital electron populations 1.21301 0.89642 1.04727 1.04498 1.23266 0.95710 0.90136 0.90904 1.76545 1.24349 0.92378 1.19276 1.88308 1.35588 1.13397 1.95701 1.18059 0.92387 0.90437 1.14418 1.21107 0.93729 0.96831 0.93359 1.21167 1.00755 0.92143 1.12835 1.20140 0.93154 0.86195 0.92302 1.83911 1.21576 1.27159 1.79604 1.21879 0.78908 0.95742 1.52793 0.87851 1.26574 1.06051 0.93434 0.95508 1.70158 1.38764 0.98480 1.47624 0.84603 0.73450 0.78979 0.79332 1.18789 1.19480 1.17701 1.20426 0.90295 0.99788 1.11597 1.21149 1.00736 0.88904 0.93632 0.88858 0.90616 0.88328 0.73421 0.85121 0.85855 0.91580 0.85141 0.81461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.27 71.23 0.66 -2.36 15 2 C 0.19 5.40 7.11 45.35 0.32 5.72 15 3 N -0.38 -11.45 11.23 -42.97 -0.48 -11.93 15 4 O -0.42 -10.28 13.73 -38.79 -0.53 -10.81 15 5 C -0.15 -4.96 5.87 -20.11 -0.12 -5.08 15 6 C -0.03 -1.12 9.57 22.51 0.22 -0.91 15 7 C -0.25 -10.80 9.15 22.35 0.20 -10.60 15 8 C 0.13 6.43 6.65 22.67 0.15 6.58 15 9 O -0.22 -12.59 9.75 -21.27 -0.21 -12.79 15 10 C -0.42 -23.58 9.48 67.92 0.64 -22.94 15 11 H 0.10 5.38 5.19 -2.91 -0.02 5.36 15 12 C -0.02 -0.93 5.49 84.84 0.47 -0.46 15 13 N -0.91 -54.32 13.67 21.61 0.30 -54.02 15 14 Si 1.02 41.66 29.55 68.60 2.03 43.69 15 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 16 H -0.27 -10.63 7.11 99.48 0.71 -9.93 15 17 H -0.25 -9.69 7.11 99.48 0.71 -8.98 15 18 C -0.20 -7.91 9.97 22.35 0.22 -7.68 15 19 C -0.02 -0.76 9.35 22.51 0.21 -0.55 15 20 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.07 1.60 7.35 -2.39 -0.02 1.59 15 22 H 0.10 1.67 6.47 -2.38 -0.02 1.65 15 23 H 0.42 6.25 9.28 -74.06 -0.69 5.56 15 24 H 0.13 4.45 7.55 -2.91 -0.02 4.43 15 25 H 0.12 5.41 5.62 -2.91 -0.02 5.40 15 26 H 0.28 14.95 8.31 -92.71 -0.77 14.18 15 27 H 0.13 4.85 8.06 -2.91 -0.02 4.83 15 28 H 0.17 3.62 6.35 -2.91 -0.02 3.60 15 Total: -1.00 -68.89 253.50 4.59 -64.30 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.51 Total: 19.84 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 2.98 Total: -38.28 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -0.19 Total: -65.95 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.74 Total: -23.60 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -68.89 4.59 -64.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308166372.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.342 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds