Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1 6 6 H 1.48492 * 109.47258 * 60.00321 * 3 2 1 7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00213 * 160.28849 * 7 2 1 9 9 N 1.36930 * 120.00030 * 340.27742 * 7 2 1 10 10 C 1.46495 * 120.00367 * 320.50568 * 9 7 2 11 11 C 1.52995 * 109.47255 * 269.99656 * 10 9 7 12 12 F 1.39899 * 109.47453 * 299.99815 * 11 10 9 13 13 F 1.39904 * 109.47053 * 59.99629 * 11 10 9 14 14 C 1.53000 * 109.47546 * 179.97438 * 11 10 9 15 15 O 1.42902 * 109.47051 * 59.99873 * 14 11 10 16 16 C 1.46508 * 119.99907 * 140.49844 * 9 7 2 17 17 C 1.52995 * 117.49650 * 3.29642 * 16 9 7 18 18 C 1.52996 * 117.50092 * 294.66902 * 16 9 7 19 19 H 0.97000 * 120.00354 * 355.01078 * 1 2 3 20 20 H 1.09002 * 109.47143 * 29.99574 * 10 9 7 21 21 H 1.09005 * 109.47612 * 149.99520 * 10 9 7 22 22 H 1.08998 * 109.47672 * 179.97438 * 14 11 10 23 23 H 1.09002 * 109.47293 * 300.00188 * 14 11 10 24 24 H 0.96701 * 114.00125 * 179.97438 * 15 14 11 25 25 H 1.09004 * 115.54897 * 148.99316 * 16 9 7 26 26 H 1.08998 * 117.50503 * 359.97438 * 17 16 9 27 27 H 1.09005 * 117.50314 * 145.02015 * 17 16 9 28 28 H 1.08999 * 117.49872 * 214.97870 * 18 16 9 29 29 H 1.09003 * 117.49679 * 359.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3533 0.3991 10 6 0.4647 -2.3297 1.5379 11 6 1.2405 -2.6062 2.8273 12 9 1.8483 -3.8636 2.7453 13 9 2.2218 -1.6243 3.0008 14 6 0.2785 -2.5809 4.0168 15 8 -0.7242 -3.5836 3.8399 16 6 1.6390 -3.6088 -0.3123 17 6 2.6689 -3.5845 -1.4435 18 6 1.1783 -3.7011 -1.7683 19 1 -0.4850 0.8368 0.0731 20 1 -0.0089 -1.3500 1.6019 21 1 -0.2999 -3.0948 1.4028 22 1 0.8311 -2.7784 4.9353 23 1 -0.1948 -1.6011 4.0806 24 1 -1.3699 -3.6252 4.5585 25 1 1.5775 -4.5130 0.2934 26 1 3.1578 -2.6344 -1.6587 27 1 3.2853 -4.4728 -1.5823 28 1 0.8139 -4.6661 -2.1207 29 1 0.6864 -2.8279 -2.1968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308197934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = -103.163382 kcal Electronic energy + Delta-G solvation = -16199.029432 eV Core-core repulsion = 13180.691632 eV Total energy + Delta-G solvation = -3018.337801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.91785 -45.95133 -37.01768 -36.59342 -33.51529 -31.11450 -29.15248 -25.71135 -23.62154 -21.35215 -20.78543 -19.76957 -17.68131 -16.87909 -15.97539 -15.91399 -15.43542 -14.74516 -14.52602 -13.99584 -13.79220 -12.86075 -12.60895 -12.53208 -12.31137 -11.85488 -11.68548 -11.14735 -11.08544 -10.74830 -10.55103 -10.42626 -10.10920 -9.91880 -9.71721 -9.56145 -9.18487 -8.50470 -6.58796 -5.83696 -3.48917 3.34204 3.42745 3.47738 4.01037 4.41781 4.79406 4.93721 5.00087 5.17191 5.33964 5.43008 5.61594 5.92812 5.98851 6.02475 6.21616 6.32833 6.56171 6.70961 6.81149 7.10129 7.26960 7.31330 7.64975 7.79478 8.44655 9.07478 9.69485 10.27449 11.13384 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.014410 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.509341 B = 1942.657129 C = 2619.694200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.015 3.985 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.545 5.545 10 C 0.123 3.877 11 C 0.263 3.737 12 F -0.207 7.207 13 F -0.190 7.190 14 C 0.041 3.959 15 O -0.554 6.554 16 C 0.119 3.881 17 C -0.193 4.193 18 C -0.218 4.218 19 H 0.255 0.745 20 H 0.116 0.884 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.381 0.619 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -4.556 6.384 7.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.185 4.185 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.260 5.260 10 C -0.006 4.006 11 C 0.224 3.776 12 F -0.188 7.188 13 F -0.171 7.171 14 C -0.039 4.039 15 O -0.359 6.359 16 C 0.011 3.989 17 C -0.232 4.232 18 C -0.259 4.259 19 H 0.065 0.935 20 H 0.134 0.866 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.228 0.772 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.641 -4.503 5.753 7.334 hybrid contribution 0.281 1.013 0.638 1.230 sum -0.360 -3.490 6.390 7.290 Atomic orbital electron populations 1.70042 1.05523 1.26220 1.51215 1.25226 0.95063 0.98929 0.99323 0.86303 0.80027 0.83691 0.77284 1.19854 1.21572 1.21264 1.19081 0.93435 0.84825 1.40911 0.91590 1.43216 1.50300 1.03811 1.28657 1.21859 0.91218 1.05169 0.82361 1.22387 0.83743 0.71963 0.99520 1.92903 1.85540 1.42932 1.97468 1.92977 1.65055 1.62573 1.96511 1.23037 0.90835 0.92957 0.97064 1.86505 1.42395 1.57123 1.49907 1.21314 1.00802 0.90339 0.86479 1.23016 0.92183 1.01887 1.06082 1.23336 0.96843 1.01031 1.04693 0.93503 0.86633 0.91621 0.92625 0.90809 0.77199 0.89064 0.88436 0.90696 0.91130 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.50 55.49 0.64 -24.37 15 2 C 0.01 0.40 4.98 -17.44 -0.09 0.32 15 3 Si 0.90 21.66 29.60 -169.99 -5.03 16.63 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.25 -6.94 7.99 -15.06 -0.12 -7.06 15 8 H 0.07 1.84 6.75 -52.48 -0.35 1.49 15 9 N -0.54 -13.93 2.66 -165.67 -0.44 -14.37 15 10 C 0.12 2.91 4.75 -4.05 -0.02 2.89 15 11 C 0.26 5.59 2.01 -26.73 -0.05 5.54 15 12 F -0.21 -4.57 16.18 2.25 0.04 -4.53 15 13 F -0.19 -4.42 16.53 2.25 0.04 -4.39 15 14 C 0.04 0.66 6.69 37.16 0.25 0.91 15 15 O -0.55 -8.29 12.93 -35.23 -0.46 -8.75 15 16 C 0.12 2.73 6.25 -67.93 -0.42 2.30 15 17 C -0.19 -4.05 9.80 -26.73 -0.26 -4.32 15 18 C -0.22 -4.66 10.36 -26.73 -0.28 -4.94 15 19 H 0.26 6.88 8.32 -40.82 -0.34 6.54 15 20 H 0.12 2.98 5.60 -51.93 -0.29 2.69 15 21 H 0.07 1.52 7.61 -51.93 -0.40 1.13 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.38 3.38 9.12 45.56 0.42 3.80 15 25 H 0.09 1.99 7.70 -51.93 -0.40 1.59 15 26 H 0.10 2.20 6.46 -51.93 -0.34 1.86 15 27 H 0.07 1.36 8.14 -51.93 -0.42 0.93 15 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 29 H 0.09 2.22 8.14 -51.93 -0.42 1.80 15 LS Contribution 255.80 15.07 3.85 3.85 Total: -1.00 -30.77 255.80 -4.97 -35.73 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -2.61 Total: 4.55 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.99 Total: -4.36 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.20 Total: -38.74 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.46 Total: -8.75 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.77 -4.97 -35.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308197934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.433 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds