Wall clock time and date at job start Mon Mar 30 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1 6 6 H 1.48492 * 109.47258 * 60.00321 * 3 2 1 7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00213 * 160.28849 * 7 2 1 9 9 N 1.36930 * 120.00030 * 340.27742 * 7 2 1 10 10 C 1.46495 * 120.00367 * 320.50568 * 9 7 2 11 11 C 1.52995 * 109.47255 * 269.99656 * 10 9 7 12 12 F 1.39899 * 109.47453 * 299.99815 * 11 10 9 13 13 F 1.39904 * 109.47053 * 59.99629 * 11 10 9 14 14 C 1.53000 * 109.47546 * 179.97438 * 11 10 9 15 15 O 1.42902 * 109.47051 * 59.99873 * 14 11 10 16 16 C 1.46508 * 119.99907 * 140.49844 * 9 7 2 17 17 C 1.52995 * 117.49650 * 3.29642 * 16 9 7 18 18 C 1.52996 * 117.50092 * 294.66902 * 16 9 7 19 19 H 0.97000 * 120.00354 * 355.01078 * 1 2 3 20 20 H 1.09002 * 109.47143 * 29.99574 * 10 9 7 21 21 H 1.09005 * 109.47612 * 149.99520 * 10 9 7 22 22 H 1.08998 * 109.47672 * 179.97438 * 14 11 10 23 23 H 1.09002 * 109.47293 * 300.00188 * 14 11 10 24 24 H 0.96701 * 114.00125 * 179.97438 * 15 14 11 25 25 H 1.09004 * 115.54897 * 148.99316 * 16 9 7 26 26 H 1.08998 * 117.50503 * 359.97438 * 17 16 9 27 27 H 1.09005 * 117.50314 * 145.02015 * 17 16 9 28 28 H 1.08999 * 117.49872 * 214.97870 * 18 16 9 29 29 H 1.09003 * 117.49679 * 359.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3533 0.3991 10 6 0.4647 -2.3297 1.5379 11 6 1.2405 -2.6062 2.8273 12 9 1.8483 -3.8636 2.7453 13 9 2.2218 -1.6243 3.0008 14 6 0.2785 -2.5809 4.0168 15 8 -0.7242 -3.5836 3.8399 16 6 1.6390 -3.6088 -0.3123 17 6 2.6689 -3.5845 -1.4435 18 6 1.1783 -3.7011 -1.7683 19 1 -0.4850 0.8368 0.0731 20 1 -0.0089 -1.3500 1.6019 21 1 -0.2999 -3.0948 1.4028 22 1 0.8311 -2.7784 4.9353 23 1 -0.1948 -1.6011 4.0806 24 1 -1.3699 -3.6252 4.5585 25 1 1.5775 -4.5130 0.2934 26 1 3.1578 -2.6344 -1.6587 27 1 3.2853 -4.4728 -1.5823 28 1 0.8139 -4.6661 -2.1207 29 1 0.6864 -2.8279 -2.1968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308197934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:52 Heat of formation + Delta-G solvation = -124.418328 kcal Electronic energy + Delta-G solvation = -16199.951116 eV Core-core repulsion = 13180.691632 eV Total energy + Delta-G solvation = -3019.259485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.63616 -47.68429 -38.78005 -37.85653 -35.39816 -33.03542 -30.80789 -27.51274 -25.44568 -23.06491 -22.43690 -21.64876 -19.05264 -18.73574 -17.56825 -17.52618 -17.26542 -16.55456 -16.35677 -15.67132 -15.30973 -14.55363 -14.46483 -14.06128 -13.92069 -13.69322 -13.51459 -13.05451 -12.86166 -12.67094 -12.40745 -12.16129 -11.89201 -11.57925 -11.35808 -11.14227 -10.89475 -10.54804 -8.58318 -7.87339 -5.57613 1.42116 1.45676 1.56223 2.45419 2.68319 3.08793 3.26717 3.30395 3.47755 3.72247 3.92103 4.10870 4.27692 4.40136 4.44770 4.52990 4.57166 4.90947 5.00829 5.03428 5.30889 5.40131 5.52254 5.66834 6.40556 6.82006 7.05542 7.70169 8.25365 9.05954 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.014410 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.509341 B = 1942.657129 C = 2619.694200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.027 4.027 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.054 0.946 9 N -0.564 5.564 10 C 0.125 3.875 11 C 0.256 3.744 12 F -0.213 7.213 13 F -0.205 7.205 14 C 0.054 3.946 15 O -0.570 6.570 16 C 0.094 3.906 17 C -0.180 4.180 18 C -0.208 4.208 19 H 0.255 0.745 20 H 0.094 0.906 21 H 0.064 0.936 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.409 0.591 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 -5.195 7.097 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.225 4.225 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.072 0.928 9 N -0.280 5.280 10 C -0.003 4.003 11 C 0.217 3.783 12 F -0.194 7.194 13 F -0.187 7.187 14 C -0.025 4.025 15 O -0.380 6.380 16 C -0.014 4.014 17 C -0.218 4.218 18 C -0.249 4.249 19 H 0.065 0.935 20 H 0.112 0.888 21 H 0.083 0.917 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.261 0.739 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.487 -5.160 6.488 8.305 hybrid contribution 0.200 1.128 0.386 1.209 sum -0.287 -4.033 6.875 7.975 Atomic orbital electron populations 1.70131 1.06490 1.26752 1.52269 1.25827 0.95750 1.01351 0.99540 0.85462 0.78919 0.80417 0.77206 1.19714 1.21473 1.20810 1.19128 0.93078 0.86007 1.40745 0.92803 1.43404 1.50524 1.04159 1.29898 1.21724 0.91335 1.03826 0.83416 1.22445 0.83864 0.71286 1.00706 1.92882 1.85743 1.43171 1.97624 1.92937 1.65876 1.63250 1.96597 1.22810 0.90465 0.94014 0.95241 1.86434 1.42962 1.56658 1.51939 1.21551 1.02742 0.89854 0.87210 1.23033 0.92149 1.02404 1.04211 1.23242 0.97117 1.01302 1.03204 0.93544 0.88822 0.91739 0.89776 0.89586 0.73939 0.87887 0.90517 0.87138 0.87786 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.05 11.50 21.65 0.25 -51.80 15 2 C -0.03 -1.49 4.98 84.86 0.42 -1.06 15 3 Si 0.95 44.74 29.60 68.60 2.03 46.77 15 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 15 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 15 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 7 C -0.26 -14.40 7.99 84.03 0.67 -13.72 15 8 H 0.05 3.06 6.75 -2.91 -0.02 3.04 15 9 N -0.56 -28.96 2.66 -678.05 -1.80 -30.76 15 10 C 0.13 5.94 4.75 86.38 0.41 6.35 15 11 C 0.26 10.63 2.01 30.59 0.06 10.69 15 12 F -0.21 -9.13 16.18 44.97 0.73 -8.40 15 13 F -0.21 -9.45 16.53 44.97 0.74 -8.71 15 14 C 0.05 1.63 6.69 71.98 0.48 2.11 15 15 O -0.57 -15.64 12.93 -148.98 -1.93 -17.56 15 16 C 0.09 4.24 6.25 44.99 0.28 4.52 15 17 C -0.18 -7.30 9.80 30.59 0.30 -7.00 15 18 C -0.21 -8.67 10.36 30.60 0.32 -8.35 15 19 H 0.26 13.91 8.32 -92.71 -0.77 13.13 15 20 H 0.09 4.90 5.60 -2.39 -0.01 4.88 15 21 H 0.06 3.00 7.61 -2.38 -0.02 2.98 15 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.41 5.98 9.12 -74.06 -0.68 5.30 15 25 H 0.10 4.35 7.70 -2.38 -0.02 4.33 15 26 H 0.08 3.44 6.46 -2.39 -0.02 3.42 15 27 H 0.11 3.67 8.14 -2.38 -0.02 3.65 15 28 H 0.10 3.60 8.14 -2.39 -0.02 3.58 15 29 H 0.06 2.90 8.14 -2.39 -0.02 2.88 15 Total: -1.00 -65.63 255.80 3.46 -62.17 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.49 Total: 14.77 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 2.94 Total: -6.47 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.55 Total: -82.56 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.93 Total: -17.56 kcal Atomic # 9 Polarization: -18.58 SS G_CDS: 1.47 Total: -17.11 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.63 3.46 -62.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308197934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.244 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds