Wall clock time and date at job start Mon Mar 30 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48497 * 109.47133 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99937 * 3 2 1 6 6 H 1.48502 * 109.46753 * 149.99668 * 3 2 1 7 7 C 1.37879 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99861 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.47439 * 111.00045 * 69.87582 * 10 9 7 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 H 1.08995 * 110.87020 * 277.39488 * 13 12 11 15 15 O 1.42900 * 111.02642 * 153.63316 * 13 12 11 16 16 C 1.42900 * 114.00010 * 97.60598 * 15 13 12 17 17 F 1.39901 * 109.46659 * 300.00168 * 16 15 13 18 18 F 1.39896 * 109.47092 * 59.99490 * 16 15 13 19 19 C 1.47843 * 110.99640 * 309.02874 * 10 9 7 20 20 H 0.97003 * 119.99790 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46976 * 60.00513 * 9 7 2 22 22 H 1.09001 * 109.47462 * 300.00221 * 9 7 2 23 23 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 24 24 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 25 25 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 26 26 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 27 27 H 1.08999 * 109.47165 * 180.02562 * 16 15 13 28 28 H 1.08996 * 110.37823 * 265.19398 * 19 10 9 29 29 H 1.09001 * 110.37314 * 27.42672 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5792 0.0010 11 6 3.7312 -3.2349 -1.2917 12 6 2.9033 -4.5043 -1.0004 13 6 3.2317 -4.7983 0.4898 14 1 4.1725 -5.3411 0.5803 15 8 2.1668 -5.5151 1.1177 16 6 2.3739 -6.9277 1.1790 17 9 2.5058 -7.4363 -0.1175 18 9 3.5382 -7.1971 1.9063 19 6 3.3578 -3.3686 1.0728 20 1 -0.4850 0.8401 -0.0004 21 1 3.8744 -0.6802 0.8912 22 1 3.8752 -0.6805 -0.8888 23 1 3.1654 -2.5632 -1.9373 24 1 4.6707 -3.5072 -1.7726 25 1 1.8388 -4.3079 -1.1285 26 1 3.2238 -5.3281 -1.6380 27 1 1.5218 -7.3989 1.6689 28 1 3.9829 -3.3766 1.9656 29 1 2.3728 -2.9629 1.3038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308398524.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:46 Heat of formation + Delta-G solvation = -150.697498 kcal Electronic energy + Delta-G solvation = -15675.748288 eV Core-core repulsion = 12655.349253 eV Total energy + Delta-G solvation = -3020.399035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.99131 -47.10083 -38.82797 -36.53640 -32.76309 -30.70701 -28.22517 -26.74291 -25.09076 -22.37470 -20.86937 -19.74303 -18.34757 -17.65487 -17.53672 -16.94279 -15.23902 -14.95808 -14.20668 -14.07668 -13.69012 -13.49636 -13.28780 -13.15010 -12.82389 -12.30736 -12.20638 -12.13231 -11.49056 -11.05669 -10.85031 -10.82325 -10.49571 -10.04895 -9.90483 -9.85339 -9.43695 -8.62230 -7.34216 -6.13011 -4.13559 3.15112 3.26261 3.34275 3.38172 3.73507 4.37590 4.57126 4.77468 4.96567 5.15515 5.20284 5.25566 5.41034 5.70131 5.97161 6.25975 6.41295 6.47440 6.53831 6.67031 6.85589 7.04937 7.08855 7.50901 7.91235 7.97017 8.40817 8.89483 9.48995 10.99402 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.049872 B = 0.007323 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.302631 B = 3822.498704 C = 3946.799152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.524 5.524 11 C 0.049 3.951 12 C -0.152 4.152 13 C 0.067 3.933 14 H 0.079 0.921 15 O -0.370 6.370 16 C 0.402 3.598 17 F -0.211 7.211 18 F -0.213 7.213 19 C 0.045 3.955 20 H 0.264 0.736 21 H 0.032 0.968 22 H 0.026 0.974 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.071 0.929 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -11.485 1.182 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.019 3.981 10 N -0.248 5.248 11 C -0.079 4.079 12 C -0.191 4.191 13 C 0.010 3.990 14 H 0.097 0.903 15 O -0.290 6.290 16 C 0.310 3.690 17 F -0.193 7.193 18 F -0.195 7.195 19 C -0.083 4.083 20 H 0.074 0.926 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.180 0.820 28 H 0.089 0.911 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.564 -11.252 1.324 12.622 hybrid contribution -0.343 0.709 -0.324 0.852 sum 5.221 -10.543 1.000 11.807 Atomic orbital electron populations 1.69930 1.06365 1.27053 1.50098 1.24974 0.94698 0.99223 0.94076 0.86805 0.80484 0.83550 0.78628 1.20212 1.21265 1.18755 1.21728 0.90459 0.94901 1.52240 0.90183 1.20392 0.94837 0.85730 0.97099 1.63954 1.54936 1.03841 1.02058 1.22594 0.97676 0.94174 0.93449 1.23223 1.02274 0.98610 0.94976 1.23624 0.88291 0.94058 0.93057 0.90252 1.88475 1.45402 1.15932 1.79209 1.23170 0.86147 0.83330 0.76370 1.93059 1.96701 1.87671 1.41910 1.93041 1.54780 1.93847 1.77805 1.23056 1.01547 0.88748 0.94952 0.92631 0.95013 0.95551 0.91278 0.92039 0.90048 0.91446 0.82035 0.91094 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.96 55.43 0.77 -26.26 15 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 15 7 C -0.55 -15.24 7.74 -34.44 -0.27 -15.50 15 8 H 0.08 2.38 6.67 -52.49 -0.35 2.03 15 9 C 0.15 3.51 4.11 -4.98 -0.02 3.49 15 10 N -0.52 -11.08 5.41 -232.69 -1.26 -12.34 15 11 C 0.05 0.94 6.44 -2.84 -0.02 0.92 15 12 C -0.15 -2.70 6.46 -24.77 -0.16 -2.86 15 13 C 0.07 1.17 3.14 -24.45 -0.08 1.09 15 14 H 0.08 1.30 7.30 -51.93 -0.38 0.92 15 15 O -0.37 -6.10 10.45 -35.23 -0.37 -6.46 15 16 C 0.40 5.01 6.25 101.05 0.63 5.65 15 17 F -0.21 -2.87 16.93 2.25 0.04 -2.84 15 18 F -0.21 -2.84 16.70 2.25 0.04 -2.80 15 19 C 0.04 0.91 6.07 -2.29 -0.01 0.89 15 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.03 0.78 7.20 -51.93 -0.37 0.40 15 22 H 0.03 0.63 7.46 -51.93 -0.39 0.24 15 23 H 0.07 1.44 7.21 -51.93 -0.37 1.07 15 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 27 H 0.16 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 29 H 0.09 2.15 5.59 -51.93 -0.29 1.86 15 LS Contribution 247.79 15.07 3.73 3.73 Total: -1.00 -30.20 247.79 -5.17 -35.37 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.44 Total: -0.59 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.02 Total: -4.34 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.49 Total: -38.60 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.37 Total: -6.46 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.08 Total: -5.64 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.20 -5.17 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308398524.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.330 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds