Wall clock time and date at job start Mon Mar 30 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48497 * 109.47133 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99937 * 3 2 1 6 6 H 1.48502 * 109.46753 * 149.99668 * 3 2 1 7 7 C 1.37879 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99861 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.47439 * 111.00045 * 69.87582 * 10 9 7 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 H 1.08995 * 110.87020 * 277.39488 * 13 12 11 15 15 O 1.42900 * 111.02642 * 153.63316 * 13 12 11 16 16 C 1.42900 * 114.00010 * 97.60598 * 15 13 12 17 17 F 1.39901 * 109.46659 * 300.00168 * 16 15 13 18 18 F 1.39896 * 109.47092 * 59.99490 * 16 15 13 19 19 C 1.47843 * 110.99640 * 309.02874 * 10 9 7 20 20 H 0.97003 * 119.99790 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46976 * 60.00513 * 9 7 2 22 22 H 1.09001 * 109.47462 * 300.00221 * 9 7 2 23 23 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 24 24 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 25 25 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 26 26 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 27 27 H 1.08999 * 109.47165 * 180.02562 * 16 15 13 28 28 H 1.08996 * 110.37823 * 265.19398 * 19 10 9 29 29 H 1.09001 * 110.37314 * 27.42672 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5792 0.0010 11 6 3.7312 -3.2349 -1.2917 12 6 2.9033 -4.5043 -1.0004 13 6 3.2317 -4.7983 0.4898 14 1 4.1725 -5.3411 0.5803 15 8 2.1668 -5.5151 1.1177 16 6 2.3739 -6.9277 1.1790 17 9 2.5058 -7.4363 -0.1175 18 9 3.5382 -7.1971 1.9063 19 6 3.3578 -3.3686 1.0728 20 1 -0.4850 0.8401 -0.0004 21 1 3.8744 -0.6802 0.8912 22 1 3.8752 -0.6805 -0.8888 23 1 3.1654 -2.5632 -1.9373 24 1 4.6707 -3.5072 -1.7726 25 1 1.8388 -4.3079 -1.1285 26 1 3.2238 -5.3281 -1.6380 27 1 1.5218 -7.3989 1.6689 28 1 3.9829 -3.3766 1.9656 29 1 2.3728 -2.9629 1.3038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308398524.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:46 Heat of formation + Delta-G solvation = -173.418088 kcal Electronic energy + Delta-G solvation = -15676.733526 eV Core-core repulsion = 12655.349253 eV Total energy + Delta-G solvation = -3021.384274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.01768 -48.12949 -40.33310 -37.96589 -34.82469 -32.46246 -29.73916 -28.61544 -26.24196 -24.21779 -22.31094 -21.46677 -19.59963 -19.09493 -18.61299 -18.58284 -16.87252 -16.47627 -15.99859 -15.27055 -15.05873 -15.00853 -14.64607 -14.51907 -14.35041 -14.05679 -13.63428 -13.55112 -12.99308 -12.80760 -12.62591 -12.36014 -12.25718 -11.78762 -11.70131 -11.43047 -11.26309 -10.78885 -9.11746 -8.30931 -6.36360 1.36295 1.38162 1.49895 2.03612 2.34417 2.69666 3.03547 3.35771 3.59343 3.61260 3.82230 3.91516 3.98884 4.26962 4.48266 4.78890 4.82929 4.87604 4.94391 5.01507 5.09027 5.23676 5.46625 5.67275 6.05432 6.19553 6.30733 6.70415 7.29906 8.84792 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.049872 B = 0.007323 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.302631 B = 3822.498704 C = 3946.799152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.551 4.551 8 H 0.043 0.957 9 C 0.153 3.847 10 N -0.521 5.521 11 C 0.046 3.954 12 C -0.146 4.146 13 C 0.077 3.923 14 H 0.099 0.901 15 O -0.391 6.391 16 C 0.400 3.600 17 F -0.217 7.217 18 F -0.216 7.216 19 C 0.042 3.958 20 H 0.266 0.734 21 H 0.032 0.968 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.212 0.788 28 H 0.086 0.914 29 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -12.007 1.211 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.590 4.590 8 H 0.061 0.939 9 C 0.025 3.975 10 N -0.245 5.245 11 C -0.082 4.082 12 C -0.185 4.185 13 C 0.020 3.980 14 H 0.117 0.883 15 O -0.312 6.312 16 C 0.309 3.691 17 F -0.199 7.199 18 F -0.198 7.198 19 C -0.086 4.086 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.228 0.772 28 H 0.104 0.896 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.318 -11.801 1.351 13.952 hybrid contribution -0.921 0.737 -0.321 1.223 sum 6.397 -11.064 1.029 12.822 Atomic orbital electron populations 1.70080 1.08322 1.28151 1.52043 1.25907 0.95504 1.03372 0.93835 0.85699 0.79564 0.78403 0.79200 1.19182 1.21114 1.16906 1.21934 0.92424 0.93537 1.51104 0.93930 1.20256 0.92172 0.87815 0.97220 1.63990 1.54360 1.02849 1.03267 1.22707 0.99109 0.94112 0.92255 1.23159 1.00327 0.98913 0.96069 1.23423 0.89444 0.92911 0.92224 0.88331 1.88459 1.45306 1.18372 1.79093 1.23888 0.87428 0.81478 0.76310 1.93045 1.96791 1.87480 1.42595 1.93033 1.55351 1.93655 1.77802 1.23018 0.99525 0.90506 0.95530 0.92520 0.94972 0.94846 0.93663 0.88828 0.92930 0.88637 0.77216 0.89588 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.68 13.96 21.45 0.30 -58.38 15 2 C 0.01 0.69 5.47 84.65 0.46 1.16 15 3 Si 0.95 43.56 27.47 68.60 1.88 45.44 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 15 6 H -0.25 -10.51 6.54 99.48 0.65 -9.86 15 7 C -0.55 -31.00 7.74 25.60 0.20 -30.80 15 8 H 0.04 2.67 6.67 -2.91 -0.02 2.65 15 9 C 0.15 7.26 4.11 85.55 0.35 7.61 15 10 N -0.52 -21.53 5.41 -890.09 -4.82 -26.35 15 11 C 0.05 1.71 6.44 86.65 0.56 2.27 15 12 C -0.15 -5.06 6.46 31.87 0.21 -4.85 15 13 C 0.08 2.60 3.14 32.07 0.10 2.70 15 14 H 0.10 2.95 7.30 -2.39 -0.02 2.93 15 15 O -0.39 -12.48 10.45 -148.98 -1.56 -14.03 15 16 C 0.40 8.98 6.25 113.37 0.71 9.69 15 17 F -0.22 -5.38 16.93 44.97 0.76 -4.62 15 18 F -0.22 -5.22 16.70 44.97 0.75 -4.47 15 19 C 0.04 1.70 6.07 86.78 0.53 2.22 15 20 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 21 H 0.03 1.52 7.20 -2.39 -0.02 1.51 15 22 H 0.03 1.54 7.46 -2.39 -0.02 1.52 15 23 H 0.04 1.89 7.21 -2.39 -0.02 1.87 15 24 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.05 2.11 8.14 -2.38 -0.02 2.09 15 26 H 0.10 2.74 8.14 -2.39 -0.02 2.73 15 27 H 0.21 2.64 8.14 -2.39 -0.02 2.62 15 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 15 29 H 0.05 2.51 5.59 -2.39 -0.01 2.49 15 Total: -1.00 -66.10 247.79 1.53 -64.57 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.09 Total: 7.84 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 3.11 Total: -10.00 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -4.52 Total: -84.72 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.56 Total: -14.03 kcal Atomic # 9 Polarization: -10.60 SS G_CDS: 1.51 Total: -9.09 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -66.10 1.53 -64.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308398524.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.851 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds