Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.32570 * 120.00445 * 125.00205 * 11 10 9 13 13 C 1.47791 * 120.00430 * 179.97438 * 12 11 10 14 14 C 1.39554 * 120.11238 * 359.72450 * 13 12 11 15 15 C 1.37931 * 119.87689 * 179.74306 * 14 13 12 16 16 C 1.38569 * 120.11907 * 0.53224 * 15 14 13 17 17 F 1.35106 * 119.88351 * 179.74379 * 16 15 14 18 18 C 1.38579 * 120.23685 * 359.72015 * 16 15 14 19 19 C 1.37926 * 120.11097 * 0.02562 * 18 16 15 20 20 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 23 23 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 24 24 H 1.08007 * 119.99622 * 304.99763 * 11 10 9 25 25 H 1.08007 * 119.99933 * 359.97438 * 12 11 10 26 26 H 1.07994 * 120.05762 * 359.97438 * 14 13 12 27 27 H 1.08003 * 119.93557 * 180.25338 * 15 14 13 28 28 H 1.07993 * 119.94321 * 180.02562 * 18 16 15 29 29 H 1.08001 * 120.05900 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 1.1488 -5.7338 -0.9407 13 6 0.1888 -6.8575 -0.9410 14 6 -0.7889 -6.9433 0.0511 15 6 -1.6857 -7.9912 0.0431 16 6 -1.6102 -8.9636 -0.9412 17 9 -2.4879 -9.9907 -0.9415 18 6 -0.6380 -8.8860 -1.9256 19 6 0.2604 -7.8395 -1.9299 20 1 -0.4849 0.8400 -0.0004 21 1 0.3555 -2.3881 0.0005 22 1 2.6847 -3.7145 -0.8895 23 1 2.6847 -3.7145 0.8905 24 1 0.3198 -4.8642 0.7659 25 1 1.9076 -5.6717 -1.7068 26 1 -0.8455 -6.1886 0.8215 27 1 -2.4454 -8.0563 0.8081 28 1 -0.5837 -9.6462 -2.6907 29 1 1.0181 -7.7801 -2.6973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308522106.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = 1.225558 kcal Electronic energy + Delta-G solvation = -13447.717147 eV Core-core repulsion = 10864.675215 eV Total energy + Delta-G solvation = -2583.041932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.94070 -39.10456 -35.61256 -33.44482 -31.24902 -31.11790 -28.90642 -25.38157 -23.35614 -22.86917 -21.55692 -19.33134 -17.79453 -17.11535 -16.26728 -15.84827 -15.63878 -14.71461 -14.40107 -13.77387 -13.62226 -13.28232 -13.15360 -12.92826 -12.58603 -12.15878 -11.74092 -11.19431 -10.91649 -10.81947 -10.62307 -10.07974 -9.97894 -9.70188 -9.20477 -8.93708 -7.90785 -6.96239 -5.79459 -3.09145 0.81570 1.18227 2.57249 3.42015 3.47476 3.49919 3.77123 4.19953 4.57455 4.62990 4.78155 4.83808 5.17480 5.23075 5.40214 5.54940 5.78478 5.83791 6.00440 6.05044 6.05706 6.18309 6.33300 6.47356 6.56394 6.80662 6.95192 7.10206 7.67447 8.38744 9.50182 10.06158 10.41435 11.43309 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.068751 B = 0.004269 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.169241 B = 6556.967870 C = 6764.967803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.173 3.827 11 C -0.109 4.109 12 C -0.147 4.147 13 C -0.044 4.044 14 C -0.093 4.093 15 C -0.148 4.148 16 C 0.081 3.919 17 F -0.145 7.145 18 C -0.151 4.151 19 C -0.089 4.089 20 H 0.255 0.745 21 H 0.385 0.615 22 H 0.027 0.973 23 H 0.033 0.967 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -17.093 -1.815 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.046 3.954 11 C -0.127 4.127 12 C -0.166 4.166 13 C -0.044 4.044 14 C -0.111 4.111 15 C -0.166 4.166 16 C 0.062 3.938 17 F -0.124 7.124 18 C -0.170 4.170 19 C -0.108 4.108 20 H 0.065 0.935 21 H 0.219 0.781 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.130 0.870 25 H 0.139 0.861 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.820 -17.004 -1.812 17.120 hybrid contribution -0.120 0.735 -0.018 0.745 sum -0.939 -16.269 -1.829 16.398 Atomic orbital electron populations 1.69676 1.05148 1.25645 1.57583 1.24778 0.95575 0.97796 1.02872 0.86086 0.78770 0.83919 0.77217 1.20491 1.21807 1.21803 1.19293 0.91122 0.83977 1.42890 0.90973 1.42318 1.05974 0.99564 1.89599 1.19816 0.92568 0.84469 0.98556 1.23816 0.98050 0.94342 0.96492 1.21535 0.99618 0.94864 1.00588 1.19243 0.95559 0.95013 0.94620 1.21277 0.93794 0.97427 0.98568 1.21068 1.01404 0.94919 0.99252 1.17775 0.90913 0.87081 0.98020 1.91476 1.67438 1.57103 1.96373 1.21038 0.96143 1.00602 0.99208 1.21126 0.98424 0.92937 0.98263 0.93485 0.78120 0.95524 0.94928 0.87044 0.86126 0.84510 0.84815 0.84940 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.55 15 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 15 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 15 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 15 9 N -0.73 -18.62 5.59 -61.08 -0.34 -18.96 15 10 C 0.17 3.45 6.70 -5.20 -0.03 3.41 15 11 C -0.11 -1.77 9.05 -36.22 -0.33 -2.10 15 12 C -0.15 -2.10 9.52 -37.58 -0.36 -2.46 15 13 C -0.04 -0.58 5.87 -105.01 -0.62 -1.19 15 14 C -0.09 -1.17 9.40 -39.20 -0.37 -1.53 15 15 C -0.15 -1.74 10.01 -39.57 -0.40 -2.13 15 16 C 0.08 0.98 7.30 -39.33 -0.29 0.69 15 17 F -0.15 -1.80 17.26 2.25 0.04 -1.76 15 18 C -0.15 -1.66 10.01 -39.57 -0.40 -2.06 15 19 C -0.09 -1.02 9.78 -39.21 -0.38 -1.40 15 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 21 H 0.39 10.32 7.66 -40.82 -0.31 10.01 15 22 H 0.03 0.53 7.81 -51.93 -0.41 0.12 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.11 1.72 6.03 -52.48 -0.32 1.40 15 25 H 0.12 1.60 7.87 -52.48 -0.41 1.19 15 26 H 0.14 1.61 6.16 -52.49 -0.32 1.29 15 27 H 0.13 1.32 8.06 -52.48 -0.42 0.89 15 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 29 H 0.13 1.23 8.06 -52.49 -0.42 0.80 15 LS Contribution 263.91 15.07 3.98 3.98 Total: -1.00 -30.59 263.91 -7.05 -37.64 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.01 Total: 5.55 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.41 Total: -16.22 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.38 Total: -46.51 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.59 -7.05 -37.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308522106.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.868 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds