Wall clock time and date at job start Mon Mar 30 2020 02:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48496 * 109.47085 * 239.99946 * 3 2 1 5 5 H 1.48504 * 109.46611 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47017 * 119.99774 * 3 2 1 7 7 C 1.38816 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99588 * 180.27877 * 7 2 1 9 9 N 1.36934 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00055 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47258 * 179.97438 * 10 9 7 12 12 C 1.32584 * 120.00039 * 127.25127 * 11 10 9 13 13 C 1.47794 * 119.99700 * 8.04176 * 12 11 10 14 14 C 1.39559 * 120.11041 * 217.92845 * 13 12 11 15 15 C 1.37926 * 119.87882 * 179.74182 * 14 13 12 16 16 C 1.38576 * 120.11816 * 0.53141 * 15 14 13 17 17 F 1.35094 * 119.88509 * 179.73893 * 16 15 14 18 18 C 1.38578 * 120.23098 * 359.72093 * 16 15 14 19 19 C 1.37929 * 120.11876 * 0.02630 * 18 16 15 20 20 H 0.97001 * 119.99798 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00254 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46835 * 300.00237 * 10 9 7 23 23 H 1.08997 * 109.47258 * 59.99738 * 10 9 7 24 24 H 1.08000 * 120.00086 * 307.24987 * 11 10 9 25 25 H 1.08003 * 119.99773 * 188.04164 * 12 11 10 26 26 H 1.08004 * 120.05746 * 359.97438 * 14 13 12 27 27 H 1.07999 * 119.93796 * 180.24918 * 15 14 13 28 28 H 1.08002 * 119.93812 * 179.97438 * 18 16 15 29 29 H 1.07995 * 120.06057 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0051 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0786 -4.8022 0.0012 12 6 1.1757 -5.7579 -0.9126 13 6 2.3428 -5.7983 -1.8184 14 6 2.1797 -6.1672 -3.1545 15 6 3.2713 -6.1981 -3.9970 16 6 4.5301 -5.8744 -3.5162 17 9 5.5969 -5.9114 -4.3443 18 6 4.6983 -5.5126 -2.1892 19 6 3.6126 -5.4734 -1.3394 20 1 -0.4850 0.8401 -0.0004 21 1 0.3555 -2.3881 0.0005 22 1 2.6846 -3.7146 -0.8894 23 1 2.6846 -3.7146 0.8905 24 1 0.2977 -4.8446 0.7460 25 1 0.4019 -6.5069 -0.9950 26 1 1.1998 -6.4243 -3.5289 27 1 3.1455 -6.4795 -5.0320 28 1 5.6816 -5.2617 -1.8194 29 1 3.7447 -5.1909 -0.3055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308522351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:56 Heat of formation + Delta-G solvation = 9.283193 kcal Electronic energy + Delta-G solvation = -13957.007301 eV Core-core repulsion = 11374.314774 eV Total energy + Delta-G solvation = -2582.692527 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.79820 -39.15351 -35.59893 -33.35607 -31.18972 -30.71816 -28.77992 -25.64339 -23.23922 -22.61473 -21.77405 -19.13084 -17.47458 -17.04652 -16.30108 -15.51093 -15.36664 -14.85252 -14.38602 -13.89276 -13.56275 -13.26132 -13.07468 -12.90248 -12.42969 -11.98499 -11.72121 -10.99550 -10.89772 -10.77888 -10.54022 -10.09165 -9.80260 -9.48552 -9.05188 -8.76918 -7.94063 -6.92084 -5.76994 -3.05888 1.03528 1.35338 2.55029 3.44601 3.48707 3.49911 3.79230 4.35786 4.61050 4.82485 4.92808 4.95688 5.30330 5.38612 5.54323 5.56940 5.82547 5.95345 6.08304 6.18839 6.20381 6.27752 6.42838 6.54240 6.66368 6.84418 6.98399 7.17160 7.68511 8.41534 9.52710 10.09204 10.44520 11.45827 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.006642 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.657102 B = 4214.610656 C = 4796.103204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.159 3.841 11 C -0.115 4.115 12 C -0.148 4.148 13 C -0.050 4.050 14 C -0.085 4.085 15 C -0.157 4.157 16 C 0.087 3.913 17 F -0.146 7.146 18 C -0.155 4.155 19 C -0.074 4.074 20 H 0.256 0.744 21 H 0.384 0.616 22 H 0.042 0.958 23 H 0.029 0.971 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -14.058 -4.377 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.032 3.968 11 C -0.133 4.133 12 C -0.167 4.167 13 C -0.050 4.050 14 C -0.103 4.103 15 C -0.176 4.176 16 C 0.068 3.932 17 F -0.124 7.124 18 C -0.174 4.174 19 C -0.092 4.092 20 H 0.066 0.934 21 H 0.218 0.782 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.478 -13.915 -4.405 15.590 hybrid contribution 0.241 1.008 -0.175 1.051 sum 5.719 -12.907 -4.580 14.842 Atomic orbital electron populations 1.69656 1.05140 1.25819 1.57563 1.24747 0.95538 0.97702 1.02884 0.86251 0.78536 0.83414 0.77908 1.21197 1.21632 1.21196 1.19186 0.91011 0.84019 1.42970 0.91189 1.42313 1.05914 0.99570 1.89465 1.20295 0.93142 0.84706 0.98613 1.23727 0.99432 0.94230 0.95950 1.21473 0.97095 1.01283 0.96833 1.19130 0.93588 0.98623 0.93648 1.21093 0.98267 0.98466 0.92496 1.20995 0.91372 1.04236 1.00965 1.17770 0.83671 1.03249 0.88469 1.91467 1.54954 1.94311 1.71699 1.21058 1.00589 1.03513 0.92205 1.21353 0.91042 0.96375 1.00472 0.93423 0.78229 0.94085 0.95390 0.86570 0.86280 0.85068 0.85068 0.84842 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.78 15 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 15 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 15 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 7 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 15 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 15 9 N -0.73 -18.83 5.59 -61.09 -0.34 -19.17 15 10 C 0.16 3.21 5.01 -5.20 -0.03 3.19 15 11 C -0.12 -1.89 9.57 -36.22 -0.35 -2.24 15 12 C -0.15 -2.11 9.79 -37.58 -0.37 -2.47 15 13 C -0.05 -0.72 5.15 -105.01 -0.54 -1.26 15 14 C -0.09 -1.11 9.78 -39.20 -0.38 -1.49 15 15 C -0.16 -2.01 10.01 -39.57 -0.40 -2.41 15 16 C 0.09 1.22 7.30 -39.33 -0.29 0.93 15 17 F -0.15 -2.06 17.26 2.25 0.04 -2.02 15 18 C -0.15 -2.12 10.01 -39.57 -0.40 -2.52 15 19 C -0.07 -1.07 7.31 -39.21 -0.29 -1.35 15 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 21 H 0.38 10.41 7.66 -40.82 -0.31 10.10 15 22 H 0.04 0.85 4.83 -51.93 -0.25 0.60 15 23 H 0.03 0.56 7.99 -51.93 -0.42 0.15 15 24 H 0.12 1.79 8.06 -52.49 -0.42 1.36 15 25 H 0.12 1.39 8.06 -52.48 -0.42 0.97 15 26 H 0.13 1.41 8.06 -52.48 -0.42 0.99 15 27 H 0.13 1.38 8.06 -52.49 -0.42 0.96 15 28 H 0.13 1.58 8.06 -52.49 -0.42 1.15 15 29 H 0.14 1.90 6.35 -52.49 -0.33 1.56 15 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -31.06 259.46 -6.94 -38.00 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.97 Total: 6.55 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -3.28 Total: -17.08 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.38 Total: -46.95 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.06 -6.94 -38.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308522351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.284 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds