Wall clock time and date at job start Mon Mar 30 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48496 * 109.47085 * 239.99946 * 3 2 1 5 5 H 1.48504 * 109.46611 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47017 * 119.99774 * 3 2 1 7 7 C 1.38816 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99588 * 180.27877 * 7 2 1 9 9 N 1.36934 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00055 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47258 * 179.97438 * 10 9 7 12 12 C 1.32584 * 120.00039 * 127.25127 * 11 10 9 13 13 C 1.47794 * 119.99700 * 8.04176 * 12 11 10 14 14 C 1.39559 * 120.11041 * 217.92845 * 13 12 11 15 15 C 1.37926 * 119.87882 * 179.74182 * 14 13 12 16 16 C 1.38576 * 120.11816 * 0.53141 * 15 14 13 17 17 F 1.35094 * 119.88509 * 179.73893 * 16 15 14 18 18 C 1.38578 * 120.23098 * 359.72093 * 16 15 14 19 19 C 1.37929 * 120.11876 * 0.02630 * 18 16 15 20 20 H 0.97001 * 119.99798 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00254 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46835 * 300.00237 * 10 9 7 23 23 H 1.08997 * 109.47258 * 59.99738 * 10 9 7 24 24 H 1.08000 * 120.00086 * 307.24987 * 11 10 9 25 25 H 1.08003 * 119.99773 * 188.04164 * 12 11 10 26 26 H 1.08004 * 120.05746 * 359.97438 * 14 13 12 27 27 H 1.07999 * 119.93796 * 180.24918 * 15 14 13 28 28 H 1.08002 * 119.93812 * 179.97438 * 18 16 15 29 29 H 1.07995 * 120.06057 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0051 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0786 -4.8022 0.0012 12 6 1.1757 -5.7579 -0.9126 13 6 2.3428 -5.7983 -1.8184 14 6 2.1797 -6.1672 -3.1545 15 6 3.2713 -6.1981 -3.9970 16 6 4.5301 -5.8744 -3.5162 17 9 5.5969 -5.9114 -4.3443 18 6 4.6983 -5.5126 -2.1892 19 6 3.6126 -5.4734 -1.3394 20 1 -0.4850 0.8401 -0.0004 21 1 0.3555 -2.3881 0.0005 22 1 2.6846 -3.7146 -0.8894 23 1 2.6846 -3.7146 0.8905 24 1 0.2977 -4.8446 0.7460 25 1 0.4019 -6.5069 -0.9950 26 1 1.1998 -6.4243 -3.5289 27 1 3.1455 -6.4795 -5.0320 28 1 5.6816 -5.2617 -1.8194 29 1 3.7447 -5.1909 -0.3055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308522351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:55 Heat of formation + Delta-G solvation = -8.937215 kcal Electronic energy + Delta-G solvation = -13957.797397 eV Core-core repulsion = 11374.314774 eV Total energy + Delta-G solvation = -2583.482623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.88835 -40.24758 -37.16500 -35.05175 -32.70645 -32.11152 -30.07357 -27.34512 -24.89811 -23.74251 -23.15918 -20.42563 -19.06289 -18.53062 -17.45773 -16.74003 -16.58390 -16.44318 -15.83933 -15.32958 -15.19735 -14.59410 -14.32161 -14.25185 -13.73928 -13.41688 -13.10309 -12.81045 -12.69003 -12.21831 -11.97398 -11.85963 -11.72938 -11.05455 -10.58894 -10.02099 -9.09269 -8.98007 -7.96143 -5.25186 -0.07937 0.31564 1.36449 1.47277 1.49999 1.56288 2.56223 2.72144 3.30311 3.37600 3.80384 3.82145 3.96148 4.13752 4.25290 4.34785 4.43458 4.61872 4.88204 4.95933 5.02086 5.12761 5.17050 5.22649 5.44492 5.47990 5.63237 5.86268 5.98744 6.26515 7.32277 8.07357 8.31453 9.27339 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.006642 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.657102 B = 4214.610656 C = 4796.103204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.160 3.840 11 C -0.145 4.145 12 C -0.115 4.115 13 C -0.074 4.074 14 C -0.083 4.083 15 C -0.156 4.156 16 C 0.075 3.925 17 F -0.149 7.149 18 C -0.163 4.163 19 C -0.086 4.086 20 H 0.252 0.748 21 H 0.374 0.626 22 H 0.042 0.958 23 H 0.028 0.972 24 H 0.124 0.876 25 H 0.152 0.848 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 -14.927 -5.195 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.386 5.386 10 C 0.035 3.965 11 C -0.163 4.163 12 C -0.133 4.133 13 C -0.074 4.074 14 C -0.101 4.101 15 C -0.175 4.175 16 C 0.056 3.944 17 F -0.127 7.127 18 C -0.182 4.182 19 C -0.104 4.104 20 H 0.061 0.939 21 H 0.205 0.795 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.142 0.858 25 H 0.170 0.830 26 H 0.175 0.825 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.928 -14.823 -5.220 16.796 hybrid contribution 0.188 1.136 0.008 1.152 sum 6.117 -13.687 -5.212 15.872 Atomic orbital electron populations 1.69812 1.06620 1.26235 1.59296 1.25575 0.96421 1.01094 1.03499 0.85211 0.77257 0.79063 0.78247 1.20492 1.21941 1.20173 1.19598 0.91477 0.85320 1.41616 0.90750 1.42560 1.05683 1.00958 1.89445 1.20376 0.93720 0.83983 0.98386 1.23475 1.00019 0.94429 0.98407 1.21788 0.96832 1.00300 0.94412 1.19376 0.93663 0.99681 0.94680 1.21404 0.99550 0.97313 0.91783 1.21313 0.90727 1.03217 1.02220 1.18014 0.84183 1.03615 0.88598 1.91459 1.55186 1.94365 1.71721 1.21246 1.01171 1.03407 0.92335 1.21450 0.91532 0.96768 1.00678 0.93905 0.79451 0.94059 0.95429 0.85831 0.83017 0.82455 0.82621 0.83618 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.93 13.06 21.65 0.28 -59.64 15 2 C -0.07 -4.28 5.50 84.86 0.47 -3.82 15 3 Si 0.97 46.55 29.55 68.60 2.03 48.57 15 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 15 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 7 C -0.25 -14.17 9.99 84.03 0.84 -13.33 15 8 H 0.07 4.07 7.83 -2.91 -0.02 4.04 15 9 N -0.74 -38.76 5.59 -347.18 -1.94 -40.71 15 10 C 0.16 6.47 5.01 85.63 0.43 6.90 15 11 C -0.15 -4.62 9.57 24.53 0.23 -4.38 15 12 C -0.11 -2.99 9.79 23.64 0.23 -2.76 15 13 C -0.07 -1.98 5.15 -20.12 -0.10 -2.08 15 14 C -0.08 -1.91 9.78 22.51 0.22 -1.69 15 15 C -0.16 -3.60 10.01 22.28 0.22 -3.37 15 16 C 0.07 1.97 7.30 22.43 0.16 2.13 15 17 F -0.15 -3.98 17.26 44.97 0.78 -3.20 15 18 C -0.16 -4.29 10.01 22.28 0.22 -4.06 15 19 C -0.09 -2.38 7.31 22.51 0.16 -2.22 15 20 H 0.25 15.08 8.31 -92.71 -0.77 14.31 15 21 H 0.37 20.60 7.66 -92.71 -0.71 19.89 15 22 H 0.04 1.69 4.83 -2.39 -0.01 1.67 15 23 H 0.03 1.11 7.99 -2.39 -0.02 1.09 15 24 H 0.12 3.71 8.06 -2.91 -0.02 3.68 15 25 H 0.15 2.96 8.06 -2.91 -0.02 2.94 15 26 H 0.16 2.76 8.06 -2.91 -0.02 2.73 15 27 H 0.16 2.75 8.06 -2.91 -0.02 2.73 15 28 H 0.15 3.32 8.06 -2.91 -0.02 3.29 15 29 H 0.14 3.71 6.35 -2.91 -0.02 3.69 15 Total: -1.00 -65.70 259.46 4.69 -61.01 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.45 Total: 22.65 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.09 Total: -28.68 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -1.66 Total: -100.35 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -65.70 4.69 -61.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308522351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.073 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds