Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00162 * 2 1 4 4 H 1.48502 * 109.46906 * 269.99794 * 3 2 1 5 5 H 1.48497 * 109.46987 * 29.99653 * 3 2 1 6 6 H 1.48502 * 109.47060 * 149.99695 * 3 2 1 7 7 C 1.38818 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99740 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99640 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99457 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.05240 * 33.58850 * 10 9 7 12 12 C 1.53869 * 110.03394 * 272.16909 * 10 9 7 13 13 C 1.54273 * 106.59806 * 240.71858 * 12 10 9 14 14 C 1.54885 * 104.19251 * 336.38783 * 13 12 10 15 15 C 1.54266 * 110.02781 * 155.00072 * 10 9 7 16 16 H 1.09002 * 110.48845 * 24.21961 * 15 10 9 17 17 O 1.42905 * 110.59994 * 261.62961 * 15 10 9 18 18 C 1.42898 * 113.99822 * 151.92006 * 17 15 10 19 19 F 1.39900 * 109.47078 * 299.99677 * 18 17 15 20 20 F 1.39894 * 109.47364 * 60.00462 * 18 17 15 21 21 H 0.97000 * 119.99530 * 0.02562 * 1 2 3 22 22 H 0.96994 * 120.00395 * 0.02562 * 9 7 2 23 23 H 1.09002 * 110.03727 * 121.43205 * 12 10 9 24 24 H 1.08998 * 110.03453 * 359.97438 * 12 10 9 25 25 H 1.08998 * 110.48282 * 217.71336 * 13 12 10 26 26 H 1.08998 * 110.59650 * 95.12096 * 13 12 10 27 27 H 1.08999 * 110.76189 * 279.63192 * 14 13 12 28 28 H 1.08999 * 110.91620 * 156.33287 * 14 13 12 29 29 H 1.09002 * 109.46476 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5605 -3.2214 -0.5640 12 6 4.3277 -2.9538 1.4472 13 6 5.8533 -3.0317 1.6628 14 6 6.4310 -3.1915 0.2346 15 6 5.5141 -2.2722 -0.6099 16 1 5.8270 -1.2321 -0.5171 17 8 5.5263 -2.6764 -1.9805 18 6 6.4910 -1.9898 -2.7804 19 9 6.2236 -0.6168 -2.7574 20 9 7.7721 -2.2242 -2.2697 21 1 -0.4849 0.8401 -0.0004 22 1 3.8646 -0.3621 0.0014 23 1 3.8808 -3.9388 1.5824 24 1 3.8878 -2.2440 2.1477 25 1 6.1082 -3.8958 2.2763 26 1 6.2227 -2.1155 2.1234 27 1 6.3541 -4.2261 -0.0997 28 1 7.4651 -2.8494 0.1927 29 1 6.4366 -2.3531 -3.8067 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378684021.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = -152.675475 kcal Electronic energy + Delta-G solvation = -15799.926355 eV Core-core repulsion = 12779.441549 eV Total energy + Delta-G solvation = -3020.484806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.93320 -47.04003 -38.77289 -35.99426 -33.60689 -30.98630 -27.94578 -27.04232 -24.95036 -22.70257 -20.77332 -19.64080 -18.34705 -17.97601 -17.48510 -17.07805 -15.26439 -15.15955 -14.35333 -14.09035 -13.70103 -13.44989 -13.26486 -13.08898 -12.68222 -12.49269 -12.36502 -11.86591 -11.66902 -11.10845 -10.81562 -10.73280 -10.41620 -10.32728 -10.07860 -9.84678 -9.57128 -8.92497 -7.28116 -5.76678 -3.12756 3.19538 3.38677 3.42625 3.46463 3.79785 4.59761 4.60147 4.75431 4.91463 5.01689 5.20376 5.44778 5.50865 5.56584 5.79433 5.90431 5.97160 6.05278 6.20992 6.30324 6.38860 6.70872 6.75080 7.10252 7.98898 8.41948 9.19299 9.92076 10.10901 11.41505 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.010408 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.516703 B = 2689.643237 C = 3269.769082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.745 5.745 10 C 0.185 3.815 11 H 0.073 0.927 12 C -0.142 4.142 13 C -0.121 4.121 14 C -0.140 4.140 15 C 0.063 3.937 16 H 0.076 0.924 17 O -0.369 6.369 18 C 0.401 3.599 19 F -0.208 7.208 20 F -0.214 7.214 21 H 0.259 0.741 22 H 0.360 0.640 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.085 -5.595 -2.492 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.387 5.387 10 C 0.075 3.925 11 H 0.091 0.909 12 C -0.182 4.182 13 C -0.159 4.159 14 C -0.178 4.178 15 C 0.005 3.995 16 H 0.094 0.906 17 O -0.290 6.290 18 C 0.309 3.691 19 F -0.190 7.190 20 F -0.197 7.197 21 H 0.070 0.930 22 H 0.194 0.806 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 14.703 -5.756 -2.558 15.996 hybrid contribution 0.805 1.552 0.086 1.751 sum 15.509 -4.204 -2.472 16.257 Atomic orbital electron populations 1.69697 1.05066 1.25818 1.57475 1.24651 0.95208 0.97126 1.01939 0.86592 0.79190 0.85104 0.77914 1.20972 1.21667 1.20396 1.19072 0.80346 0.94802 1.43076 0.89032 1.42859 1.04174 1.01581 1.90081 1.20795 0.88588 0.90075 0.93007 0.90896 1.22863 0.94363 1.01575 0.99417 1.22270 0.96772 1.01307 0.95566 1.22936 0.98430 1.00504 0.95944 1.23707 0.98840 0.98221 0.78686 0.90584 1.88453 1.55938 1.62131 1.22526 1.23143 0.74237 0.75591 0.96155 1.93074 1.93419 1.35200 1.97286 1.93040 1.42715 1.94118 1.89793 0.93043 0.80641 0.92097 0.90375 0.91828 0.91894 0.90448 0.91509 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.70 15 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 15 3 Si 0.88 22.53 27.74 -169.99 -4.71 17.81 15 4 H -0.28 -7.25 7.11 56.52 0.40 -6.84 15 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 15 6 H -0.28 -6.71 6.52 56.52 0.37 -6.34 15 7 C -0.24 -6.92 10.44 -15.06 -0.16 -7.08 15 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 15 9 N -0.74 -17.98 4.83 -52.34 -0.25 -18.23 15 10 C 0.19 3.67 3.31 -66.81 -0.22 3.45 15 11 H 0.07 1.53 8.01 -51.93 -0.42 1.11 15 12 C -0.14 -2.44 6.59 -25.61 -0.17 -2.60 15 13 C -0.12 -1.69 6.83 -25.07 -0.17 -1.86 15 14 C -0.14 -1.95 6.14 -24.74 -0.15 -2.10 15 15 C 0.06 1.07 2.74 -25.07 -0.07 1.00 15 16 H 0.08 1.36 6.87 -51.93 -0.36 1.00 15 17 O -0.37 -6.00 10.36 -35.23 -0.36 -6.37 15 18 C 0.40 5.28 6.26 101.05 0.63 5.91 15 19 F -0.21 -3.30 16.67 2.25 0.04 -3.26 15 20 F -0.21 -2.83 16.39 2.25 0.04 -2.80 15 21 H 0.26 7.81 8.31 -40.82 -0.34 7.47 15 22 H 0.36 8.67 5.42 -40.82 -0.22 8.45 15 23 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.08 1.49 7.92 -51.93 -0.41 1.08 15 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.07 0.86 7.80 -51.93 -0.40 0.46 15 29 H 0.16 1.38 8.14 -51.93 -0.42 0.96 15 LS Contribution 251.59 15.07 3.79 3.79 Total: -1.00 -31.77 251.59 -4.61 -36.38 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -3.51 Total: 4.56 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.40 Total: -3.18 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.52 Total: -46.93 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.36 Total: -6.37 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.07 Total: -6.06 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.77 -4.61 -36.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378684021.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.293 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds