Wall clock time and date at job start Mon Mar 30 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00068 * 2 1 4 4 H 1.48506 * 109.47202 * 239.72870 * 3 2 1 5 5 H 1.48503 * 109.47177 * 359.72512 * 3 2 1 6 6 H 1.48501 * 109.47386 * 119.72687 * 3 2 1 7 7 C 1.38811 * 119.99685 * 179.72892 * 2 1 3 8 8 H 1.07998 * 119.99932 * 146.27083 * 7 2 1 9 9 N 1.36933 * 120.00230 * 326.27039 * 7 2 1 10 10 C 1.47425 * 125.64839 * 348.13115 * 9 7 2 11 11 C 1.54909 * 104.83527 * 204.09243 * 10 9 7 12 12 C 1.55161 * 101.57772 * 322.99244 * 11 10 9 13 13 H 1.08998 * 110.72268 * 277.13595 * 12 11 10 14 14 C 1.53010 * 110.71710 * 154.04226 * 12 11 10 15 15 O 1.42899 * 109.46902 * 174.99678 * 14 12 11 16 16 C 1.42898 * 113.99714 * 179.97438 * 15 14 12 17 17 F 1.39897 * 109.47528 * 300.00384 * 16 15 14 18 18 F 1.39901 * 109.47057 * 60.00756 * 16 15 14 19 19 C 1.47021 * 125.65039 * 167.82543 * 9 7 2 20 20 H 0.96996 * 120.00111 * 174.25018 * 1 2 3 21 21 H 1.08998 * 110.36609 * 322.93569 * 10 9 7 22 22 H 1.09005 * 110.36265 * 85.25263 * 10 9 7 23 23 H 1.08994 * 111.00417 * 81.06338 * 11 10 9 24 24 H 1.08995 * 111.00622 * 204.92238 * 11 10 9 25 25 H 1.08998 * 109.46854 * 294.99552 * 14 12 11 26 26 H 1.08997 * 109.47015 * 54.99866 * 14 12 11 27 27 H 1.09004 * 109.46886 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.88310 * 298.39940 * 19 9 7 29 29 H 1.09008 * 109.88394 * 59.55700 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1089 1.6935 -1.2092 5 1 1.2852 2.7465 -0.0067 6 1 3.0990 1.6993 1.2158 7 6 2.0102 -1.2022 0.0057 8 1 2.9538 -1.2834 -0.5133 9 7 1.4984 -2.2851 0.6693 10 6 0.3659 -2.2582 1.6128 11 6 0.5730 -3.4991 2.5165 12 6 1.1268 -4.5343 1.5020 13 1 0.3137 -5.0106 0.9543 14 6 1.9854 -5.5827 2.2126 15 8 2.3848 -6.5854 1.2761 16 6 3.1956 -7.6178 1.8406 17 9 4.3636 -7.0574 2.3687 18 9 2.4863 -8.2634 2.8592 19 6 1.9831 -3.6683 0.5541 20 1 -0.4850 -0.8358 -0.0842 21 1 0.3906 -1.3461 2.2091 22 1 -0.5786 -2.3346 1.0740 23 1 1.3006 -3.2936 3.3016 24 1 -0.3729 -3.8356 2.9409 25 1 2.8703 -5.1040 2.6320 26 1 1.4073 -6.0433 3.0137 27 1 3.4570 -8.3389 1.0661 28 1 1.8702 -4.0164 -0.4726 29 1 3.0304 -3.7202 0.8522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379357945.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:43 Heat of formation + Delta-G solvation = -143.347689 kcal Electronic energy + Delta-G solvation = -15365.410391 eV Core-core repulsion = 12345.330068 eV Total energy + Delta-G solvation = -3020.080323 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.14193 -47.25829 -38.47754 -36.89942 -33.03885 -30.03249 -28.69303 -26.05658 -24.78195 -23.34541 -20.30597 -19.86489 -18.30722 -17.88582 -17.74020 -17.39564 -15.66191 -14.70631 -14.40285 -14.25280 -13.74769 -13.68037 -13.60739 -13.10378 -13.00575 -12.40688 -12.14947 -11.69976 -11.55885 -10.86126 -10.71085 -10.42955 -10.39478 -10.13795 -10.06896 -9.95108 -9.57300 -8.30483 -6.92546 -6.11979 -3.04619 2.97661 3.53323 3.58177 3.59952 3.75810 4.42167 4.62301 4.68249 5.01748 5.08656 5.22940 5.32001 5.43720 5.59709 5.79298 5.90247 6.13328 6.22409 6.37550 6.54738 6.71741 6.84544 6.99927 7.05696 7.83522 8.52077 9.04676 9.85844 10.42170 11.22662 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.056323 B = 0.006224 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.013857 B = 4497.882255 C = 4768.054040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.023 4.023 3 Si 1.057 2.943 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.294 1.294 7 C -0.342 4.342 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.145 3.855 11 C -0.127 4.127 12 C -0.097 4.097 13 H 0.082 0.918 14 C 0.063 3.937 15 O -0.381 6.381 16 C 0.403 3.597 17 F -0.210 7.210 18 F -0.214 7.214 19 C 0.145 3.855 20 H 0.268 0.732 21 H 0.054 0.946 22 H 0.025 0.975 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.164 0.836 28 H 0.025 0.975 29 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 -14.235 5.135 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.225 4.225 3 Si 0.886 3.114 4 H -0.220 1.220 5 H -0.212 1.212 6 H -0.222 1.222 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.166 4.166 12 C -0.116 4.116 13 H 0.101 0.899 14 C -0.013 4.013 15 O -0.303 6.303 16 C 0.311 3.689 17 F -0.192 7.192 18 F -0.196 7.196 19 C 0.019 3.981 20 H 0.079 0.921 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.181 0.819 28 H 0.043 0.957 29 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.843 -12.482 4.986 13.979 hybrid contribution 0.340 -1.798 0.188 1.840 sum 4.183 -14.280 5.174 15.754 Atomic orbital electron populations 1.70788 1.06861 1.30042 1.47294 1.25654 0.96179 1.00895 0.99788 0.83644 0.75095 0.76387 0.76234 1.22036 1.21155 1.22184 1.19707 1.03836 0.89779 1.33652 0.91542 1.44628 1.37188 1.02520 1.48844 1.21492 0.91180 0.94948 0.90434 1.22822 1.00011 0.96341 0.97412 1.22175 0.97909 0.93825 0.97729 0.89937 1.22820 0.98865 0.88202 0.91417 1.88447 1.68201 1.36124 1.37488 1.23157 0.75125 0.86402 0.84190 1.93061 1.50475 1.86869 1.88844 1.93045 1.79512 1.82068 1.64940 1.21287 0.95484 0.85349 0.95967 0.92132 0.92816 0.95761 0.91473 0.91484 0.91575 0.92007 0.81906 0.95748 0.95617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 12.86 55.49 0.71 -27.18 15 2 C -0.02 -0.68 4.96 -17.43 -0.09 -0.76 15 3 Si 1.06 25.77 30.03 -169.99 -5.10 20.66 15 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 7 C -0.34 -10.00 9.97 -15.06 -0.15 -10.15 15 8 H 0.07 1.94 8.02 -52.49 -0.42 1.52 15 9 N -0.60 -15.91 3.33 -170.07 -0.57 -16.48 15 10 C 0.15 3.43 5.33 -2.53 -0.01 3.42 15 11 C -0.13 -2.29 6.53 -24.58 -0.16 -2.45 15 12 C -0.10 -1.72 3.19 -88.78 -0.28 -2.00 15 13 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 14 C 0.06 0.93 5.00 37.16 0.19 1.12 15 15 O -0.38 -5.37 10.58 -35.23 -0.37 -5.75 15 16 C 0.40 4.35 6.30 101.05 0.64 4.99 15 17 F -0.21 -2.66 16.88 2.25 0.04 -2.62 15 18 F -0.21 -2.50 16.88 2.25 0.04 -2.46 15 19 C 0.14 3.19 6.80 -3.06 -0.02 3.17 15 20 H 0.27 8.25 6.43 -40.82 -0.26 7.99 15 21 H 0.05 1.38 7.81 -51.93 -0.41 0.97 15 22 H 0.02 0.61 7.02 -51.93 -0.36 0.24 15 23 H 0.07 1.16 8.05 -51.93 -0.42 0.74 15 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.07 1.01 7.54 -51.93 -0.39 0.62 15 26 H 0.06 0.82 7.73 -51.93 -0.40 0.42 15 27 H 0.16 1.03 8.14 -51.93 -0.42 0.60 15 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 29 H 0.03 0.57 7.70 -51.92 -0.40 0.17 15 LS Contribution 252.83 15.07 3.81 3.81 Total: -1.00 -32.41 252.83 -4.89 -37.29 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -3.55 Total: -4.60 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.11 Total: -2.68 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.15 Total: -43.66 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.37 Total: -5.75 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.08 Total: -5.08 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.41 -4.89 -37.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379357945.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.054 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds