Wall clock time and date at job start Mon Mar 30 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00068 * 2 1 4 4 H 1.48506 * 109.47202 * 239.72870 * 3 2 1 5 5 H 1.48503 * 109.47177 * 359.72512 * 3 2 1 6 6 H 1.48501 * 109.47386 * 119.72687 * 3 2 1 7 7 C 1.38811 * 119.99685 * 179.72892 * 2 1 3 8 8 H 1.07998 * 119.99932 * 146.27083 * 7 2 1 9 9 N 1.36933 * 120.00230 * 326.27039 * 7 2 1 10 10 C 1.47425 * 125.64839 * 348.13115 * 9 7 2 11 11 C 1.54909 * 104.83527 * 204.09243 * 10 9 7 12 12 C 1.55161 * 101.57772 * 322.99244 * 11 10 9 13 13 H 1.08998 * 110.72268 * 277.13595 * 12 11 10 14 14 C 1.53010 * 110.71710 * 154.04226 * 12 11 10 15 15 O 1.42899 * 109.46902 * 174.99678 * 14 12 11 16 16 C 1.42898 * 113.99714 * 179.97438 * 15 14 12 17 17 F 1.39897 * 109.47528 * 300.00384 * 16 15 14 18 18 F 1.39901 * 109.47057 * 60.00756 * 16 15 14 19 19 C 1.47021 * 125.65039 * 167.82543 * 9 7 2 20 20 H 0.96996 * 120.00111 * 174.25018 * 1 2 3 21 21 H 1.08998 * 110.36609 * 322.93569 * 10 9 7 22 22 H 1.09005 * 110.36265 * 85.25263 * 10 9 7 23 23 H 1.08994 * 111.00417 * 81.06338 * 11 10 9 24 24 H 1.08995 * 111.00622 * 204.92238 * 11 10 9 25 25 H 1.08998 * 109.46854 * 294.99552 * 14 12 11 26 26 H 1.08997 * 109.47015 * 54.99866 * 14 12 11 27 27 H 1.09004 * 109.46886 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.88310 * 298.39940 * 19 9 7 29 29 H 1.09008 * 109.88394 * 59.55700 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1089 1.6935 -1.2092 5 1 1.2852 2.7465 -0.0067 6 1 3.0990 1.6993 1.2158 7 6 2.0102 -1.2022 0.0057 8 1 2.9538 -1.2834 -0.5133 9 7 1.4984 -2.2851 0.6693 10 6 0.3659 -2.2582 1.6128 11 6 0.5730 -3.4991 2.5165 12 6 1.1268 -4.5343 1.5020 13 1 0.3137 -5.0106 0.9543 14 6 1.9854 -5.5827 2.2126 15 8 2.3848 -6.5854 1.2761 16 6 3.1956 -7.6178 1.8406 17 9 4.3636 -7.0574 2.3687 18 9 2.4863 -8.2634 2.8592 19 6 1.9831 -3.6683 0.5541 20 1 -0.4850 -0.8358 -0.0842 21 1 0.3906 -1.3461 2.2091 22 1 -0.5786 -2.3346 1.0740 23 1 1.3006 -3.2936 3.3016 24 1 -0.3729 -3.8356 2.9409 25 1 2.8703 -5.1040 2.6320 26 1 1.4073 -6.0433 3.0137 27 1 3.4570 -8.3389 1.0661 28 1 1.8702 -4.0164 -0.4726 29 1 3.0304 -3.7202 0.8522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379357945.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:43 Heat of formation + Delta-G solvation = -165.326268 kcal Electronic energy + Delta-G solvation = -15366.363454 eV Core-core repulsion = 12345.330068 eV Total energy + Delta-G solvation = -3021.033386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.02192 -48.14626 -39.92508 -38.29294 -34.99918 -31.86950 -30.36999 -27.48392 -26.32473 -24.84378 -22.17203 -21.37664 -19.63196 -19.21849 -18.77758 -18.64840 -17.06493 -16.38362 -15.75593 -15.58218 -15.44609 -15.09258 -14.80836 -14.51851 -14.29360 -13.96802 -13.47475 -13.08832 -12.99732 -12.63208 -12.47823 -12.20227 -11.98181 -11.89865 -11.68660 -11.64926 -11.38187 -10.47784 -9.06856 -8.42120 -5.30918 1.56544 1.64315 1.84406 2.04879 2.62583 2.74112 3.10601 3.45857 3.59474 3.71605 3.80313 3.89599 3.93535 4.28310 4.31198 4.41617 4.51669 4.69005 4.87788 4.93734 5.06173 5.18231 5.29769 5.52650 5.64439 6.27236 6.85950 7.68484 8.26980 8.92242 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.056323 B = 0.006224 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.013857 B = 4497.882255 C = 4768.054040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.073 4.073 3 Si 1.112 2.888 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.360 4.360 8 H 0.058 0.942 9 N -0.628 5.628 10 C 0.143 3.857 11 C -0.110 4.110 12 C -0.084 4.084 13 H 0.088 0.912 14 C 0.070 3.930 15 O -0.398 6.398 16 C 0.401 3.599 17 F -0.222 7.222 18 F -0.218 7.218 19 C 0.140 3.860 20 H 0.254 0.746 21 H 0.024 0.976 22 H 0.006 0.994 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.213 0.787 28 H 0.011 0.989 29 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -15.430 5.952 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.270 4.270 3 Si 0.936 3.064 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.488 4.488 8 H 0.076 0.924 9 N -0.356 5.356 10 C 0.018 3.982 11 C -0.148 4.148 12 C -0.103 4.103 13 H 0.107 0.893 14 C -0.006 4.006 15 O -0.320 6.320 16 C 0.310 3.690 17 F -0.205 7.205 18 F -0.200 7.200 19 C 0.015 3.985 20 H 0.064 0.936 21 H 0.042 0.958 22 H 0.024 0.976 23 H 0.096 0.904 24 H 0.121 0.879 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.229 0.771 28 H 0.029 0.971 29 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.553 -13.718 5.809 15.578 hybrid contribution 0.139 -1.500 -0.104 1.510 sum 4.692 -15.218 5.705 16.916 Atomic orbital electron populations 1.70909 1.07735 1.29208 1.49718 1.27106 0.96294 1.04305 0.99285 0.82910 0.74063 0.72065 0.77355 1.20024 1.21474 1.20780 1.19969 1.03567 0.91374 1.33858 0.92418 1.44942 1.37796 1.03708 1.49117 1.21477 0.89674 0.96566 0.90469 1.22724 1.02216 0.93351 0.96522 1.22041 0.97705 0.93842 0.96707 0.89320 1.22614 0.98462 0.88010 0.91467 1.88420 1.68928 1.36624 1.37986 1.23892 0.74024 0.86060 0.85010 1.93041 1.51101 1.87179 1.89143 1.93036 1.79630 1.81927 1.65417 1.21420 0.96251 0.84248 0.96542 0.93632 0.95772 0.97626 0.90387 0.87932 0.92077 0.89613 0.77077 0.97133 0.95723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.65 12.86 21.65 0.28 -58.37 15 2 C -0.07 -4.34 4.96 84.86 0.42 -3.92 15 3 Si 1.11 52.33 30.03 68.60 2.06 54.39 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 15 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 7 C -0.36 -21.41 9.97 84.03 0.84 -20.57 15 8 H 0.06 3.44 8.02 -2.91 -0.02 3.42 15 9 N -0.63 -33.65 3.33 -691.98 -2.30 -35.95 15 10 C 0.14 6.88 5.33 86.85 0.46 7.35 15 11 C -0.11 -3.75 6.53 31.99 0.21 -3.54 15 12 C -0.08 -2.81 3.19 -9.60 -0.03 -2.84 15 13 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 14 C 0.07 1.89 5.00 71.99 0.36 2.25 15 15 O -0.40 -10.16 10.58 -148.98 -1.58 -11.73 15 16 C 0.40 7.41 6.30 113.37 0.71 8.13 15 17 F -0.22 -5.10 16.88 44.97 0.76 -4.34 15 18 F -0.22 -4.44 16.88 44.97 0.76 -3.68 15 19 C 0.14 6.17 6.80 86.73 0.59 6.76 15 20 H 0.25 16.22 6.43 -92.71 -0.60 15.63 15 21 H 0.02 1.27 7.81 -2.39 -0.02 1.25 15 22 H 0.01 0.30 7.02 -2.38 -0.02 0.29 15 23 H 0.08 2.51 8.05 -2.39 -0.02 2.49 15 24 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.06 1.72 7.54 -2.39 -0.02 1.70 15 26 H 0.09 1.94 7.73 -2.39 -0.02 1.93 15 27 H 0.21 1.80 8.14 -2.38 -0.02 1.78 15 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 29 H 0.02 1.09 7.70 -2.38 -0.02 1.07 15 Total: -1.00 -71.32 252.83 4.86 -66.47 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: 1.31 Total: -0.41 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.56 Total: -6.38 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -2.02 Total: -94.32 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.58 Total: -11.73 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 1.52 Total: -8.02 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.06 Total: 54.39 kcal Total: -71.32 4.86 -66.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379357945.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.860 kcal (2) G-P(sol) polarization free energy of solvation -71.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds