Wall clock time and date at job start Mon Mar 30 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99933 * 2 1 4 4 H 1.48496 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47011 * 299.99965 * 3 2 1 6 6 H 1.48498 * 109.47048 * 59.99670 * 3 2 1 7 7 C 1.37874 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00137 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.47908 * 110.99980 * 69.87582 * 10 9 7 12 12 C 1.53993 * 107.05700 * 145.84080 * 11 10 9 13 13 C 1.54595 * 105.14156 * 358.77979 * 12 11 10 14 14 H 1.09002 * 110.72361 * 96.39803 * 13 12 11 15 15 O 1.42899 * 110.72339 * 219.50418 * 13 12 11 16 16 C 1.42898 * 114.00009 * 266.14747 * 15 13 12 17 17 F 1.39901 * 109.46967 * 299.99702 * 16 15 13 18 18 F 1.39897 * 109.47438 * 60.00025 * 16 15 13 19 19 C 1.48534 * 111.00286 * 187.27090 * 10 9 7 20 20 H 0.96996 * 120.00491 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46679 * 60.00718 * 9 7 2 22 22 H 1.09001 * 109.47515 * 300.00296 * 9 7 2 23 23 H 1.09000 * 109.91335 * 26.49151 * 11 10 9 24 24 H 1.08993 * 109.92102 * 265.19876 * 11 10 9 25 25 H 1.08997 * 110.31194 * 239.86204 * 12 11 10 26 26 H 1.09002 * 110.38848 * 117.73755 * 12 11 10 27 27 H 1.09009 * 109.47258 * 180.02562 * 16 15 13 28 28 H 1.09000 * 110.66603 * 81.84380 * 19 10 9 29 29 H 1.09003 * 110.66913 * 318.72032 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 2.9112 -3.7087 1.2993 12 6 3.1616 -5.2036 1.5711 13 6 2.5294 -5.9438 0.3701 14 1 3.2836 -6.1712 -0.3833 15 8 1.8718 -7.1371 0.8009 16 6 2.6857 -8.3092 0.7245 17 9 3.0857 -8.5136 -0.6004 18 9 3.8157 -8.1459 1.5329 19 6 1.5061 -4.9143 -0.1716 20 1 -0.4851 0.8400 -0.0004 21 1 0.6242 -2.5575 -0.8881 22 1 0.6247 -2.5564 0.8919 23 1 2.2915 -3.2862 2.0903 24 1 3.8611 -3.1770 1.2442 25 1 2.6770 -5.5058 2.4995 26 1 4.2315 -5.4066 1.6201 27 1 2.1142 -9.1715 1.0683 28 1 1.2952 -5.0993 -1.2249 29 1 0.5881 -4.9387 0.4156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379362193.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:50 Heat of formation + Delta-G solvation = -155.898946 kcal Electronic energy + Delta-G solvation = -15327.415640 eV Core-core repulsion = 12306.791053 eV Total energy + Delta-G solvation = -3020.624587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.10603 -47.21782 -38.86515 -36.52746 -32.93206 -30.56678 -28.37861 -26.46092 -25.06582 -22.59884 -20.89018 -20.11806 -18.40164 -17.74652 -17.63172 -16.22846 -15.39870 -15.30880 -14.39511 -14.13632 -13.61275 -13.56641 -13.42405 -13.19667 -12.83355 -12.56063 -12.19311 -11.98269 -11.67628 -11.04156 -10.92548 -10.72191 -10.53154 -10.19125 -10.13898 -9.88605 -9.20257 -8.45389 -7.44122 -6.04529 -4.06102 2.98249 3.30671 3.37975 3.43258 3.61132 4.42426 4.43210 4.65316 4.88028 5.02062 5.18025 5.27610 5.33047 5.59010 5.86450 6.03136 6.10127 6.26412 6.50150 6.59221 6.73820 7.13176 7.25575 7.74296 7.95477 8.11427 8.45502 9.01776 9.58414 11.06626 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.070570 B = 0.005761 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.675090 B = 4859.207404 C = 5017.572697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.184 3.816 10 N -0.512 5.512 11 C 0.051 3.949 12 C -0.149 4.149 13 C 0.072 3.928 14 H 0.086 0.914 15 O -0.378 6.378 16 C 0.403 3.597 17 F -0.210 7.210 18 F -0.210 7.210 19 C 0.043 3.957 20 H 0.261 0.739 21 H 0.033 0.967 22 H -0.004 1.004 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.163 0.837 28 H 0.082 0.918 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -15.156 2.572 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.059 3.941 10 N -0.238 5.238 11 C -0.078 4.078 12 C -0.188 4.188 13 C 0.015 3.985 14 H 0.104 0.896 15 O -0.299 6.299 16 C 0.311 3.689 17 F -0.193 7.193 18 F -0.192 7.192 19 C -0.085 4.085 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.014 0.986 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.180 0.820 28 H 0.100 0.900 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.484 -14.916 2.198 15.730 hybrid contribution 0.107 0.795 0.569 0.984 sum 4.591 -14.121 2.766 15.104 Atomic orbital electron populations 1.69969 1.06073 1.26742 1.51047 1.24999 0.94887 0.99390 0.95389 0.86416 0.80078 0.83285 0.77507 1.19630 1.20974 1.21104 1.21156 0.93599 0.89767 1.50030 0.91790 1.19937 0.90149 0.87531 0.96475 1.64909 1.27402 1.01632 1.29849 1.22633 1.00110 0.93021 0.91992 1.22967 1.00967 0.96795 0.98048 1.23357 0.95824 0.82938 0.96424 0.89638 1.88417 1.39693 1.16306 1.85476 1.23130 0.79753 0.92152 0.73822 1.93056 1.92058 1.95169 1.38972 1.93069 1.56262 1.96307 1.73558 1.23136 0.95130 0.89492 1.00782 0.92930 0.94938 0.98615 0.93428 0.90674 0.90894 0.91097 0.82022 0.89988 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 15 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 15 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 7 C -0.51 -14.37 8.82 -34.44 -0.30 -14.67 15 8 H 0.06 1.80 7.78 -52.49 -0.41 1.39 15 9 C 0.18 4.86 4.52 -4.98 -0.02 4.84 15 10 N -0.51 -11.30 5.26 -231.89 -1.22 -12.52 15 11 C 0.05 1.00 6.15 -2.75 -0.02 0.98 15 12 C -0.15 -2.38 6.18 -25.37 -0.16 -2.54 15 13 C 0.07 1.14 3.22 -24.87 -0.08 1.06 15 14 H 0.09 1.34 7.29 -51.93 -0.38 0.96 15 15 O -0.38 -5.29 10.38 -35.23 -0.37 -5.65 15 16 C 0.40 4.32 6.27 101.05 0.63 4.96 15 17 F -0.21 -2.58 16.67 2.25 0.04 -2.54 15 18 F -0.21 -2.54 16.70 2.25 0.04 -2.50 15 19 C 0.04 0.80 6.27 -1.90 -0.01 0.79 15 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 21 H 0.03 0.91 8.11 -51.93 -0.42 0.49 15 22 H 0.00 -0.11 7.81 -51.93 -0.41 -0.52 15 23 H 0.05 0.99 7.57 -51.93 -0.39 0.59 15 24 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.07 1.11 8.07 -51.93 -0.42 0.69 15 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.16 0.97 8.14 -51.92 -0.42 0.55 15 28 H 0.08 1.46 8.14 -51.93 -0.42 1.03 15 29 H 0.05 0.94 8.02 -51.93 -0.42 0.53 15 LS Contribution 255.59 15.07 3.85 3.85 Total: -1.00 -30.65 255.59 -5.67 -36.32 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -3.67 Total: -4.46 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.06 Total: -3.13 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.48 Total: -38.58 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.37 Total: -5.65 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.08 Total: -5.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.65 -5.67 -36.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379362193.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.579 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds