Wall clock time and date at job start Mon Mar 30 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99933 * 2 1 4 4 H 1.48496 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47011 * 299.99965 * 3 2 1 6 6 H 1.48498 * 109.47048 * 59.99670 * 3 2 1 7 7 C 1.37874 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00137 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.47908 * 110.99980 * 69.87582 * 10 9 7 12 12 C 1.53993 * 107.05700 * 145.84080 * 11 10 9 13 13 C 1.54595 * 105.14156 * 358.77979 * 12 11 10 14 14 H 1.09002 * 110.72361 * 96.39803 * 13 12 11 15 15 O 1.42899 * 110.72339 * 219.50418 * 13 12 11 16 16 C 1.42898 * 114.00009 * 266.14747 * 15 13 12 17 17 F 1.39901 * 109.46967 * 299.99702 * 16 15 13 18 18 F 1.39897 * 109.47438 * 60.00025 * 16 15 13 19 19 C 1.48534 * 111.00286 * 187.27090 * 10 9 7 20 20 H 0.96996 * 120.00491 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46679 * 60.00718 * 9 7 2 22 22 H 1.09001 * 109.47515 * 300.00296 * 9 7 2 23 23 H 1.09000 * 109.91335 * 26.49151 * 11 10 9 24 24 H 1.08993 * 109.92102 * 265.19876 * 11 10 9 25 25 H 1.08997 * 110.31194 * 239.86204 * 12 11 10 26 26 H 1.09002 * 110.38848 * 117.73755 * 12 11 10 27 27 H 1.09009 * 109.47258 * 180.02562 * 16 15 13 28 28 H 1.09000 * 110.66603 * 81.84380 * 19 10 9 29 29 H 1.09003 * 110.66913 * 318.72032 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 2.9112 -3.7087 1.2993 12 6 3.1616 -5.2036 1.5711 13 6 2.5294 -5.9438 0.3701 14 1 3.2836 -6.1712 -0.3833 15 8 1.8718 -7.1371 0.8009 16 6 2.6857 -8.3092 0.7245 17 9 3.0857 -8.5136 -0.6004 18 9 3.8157 -8.1459 1.5329 19 6 1.5061 -4.9143 -0.1716 20 1 -0.4851 0.8400 -0.0004 21 1 0.6242 -2.5575 -0.8881 22 1 0.6247 -2.5564 0.8919 23 1 2.2915 -3.2862 2.0903 24 1 3.8611 -3.1770 1.2442 25 1 2.6770 -5.5058 2.4995 26 1 4.2315 -5.4066 1.6201 27 1 2.1142 -9.1715 1.0683 28 1 1.2952 -5.0993 -1.2249 29 1 0.5881 -4.9387 0.4156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379362193.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:50 Heat of formation + Delta-G solvation = -178.092995 kcal Electronic energy + Delta-G solvation = -15328.378046 eV Core-core repulsion = 12306.791053 eV Total energy + Delta-G solvation = -3021.586993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.99135 -48.11018 -40.26413 -37.89409 -35.01275 -32.28604 -29.86487 -28.29942 -26.13565 -24.52624 -22.25603 -21.76479 -19.44656 -18.79301 -18.56865 -18.28766 -16.96594 -16.76183 -16.13613 -15.17396 -15.03145 -14.90639 -14.56969 -14.49453 -14.30771 -14.17221 -13.63857 -13.42036 -13.11246 -12.90203 -12.58721 -12.39163 -12.30657 -11.91431 -11.67391 -11.44024 -11.23320 -10.63904 -9.25693 -8.23405 -6.34023 1.40825 1.41447 1.55396 1.98882 2.39968 2.73552 3.09379 3.33001 3.52239 3.61617 3.81634 3.91987 3.97542 4.22351 4.46049 4.58594 4.73169 4.84492 4.90717 4.99648 5.10314 5.18861 5.56488 5.62738 5.95393 6.16302 6.42181 6.81115 7.36044 8.88431 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.070570 B = 0.005761 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.675090 B = 4859.207404 C = 5017.572697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.200 3.800 10 N -0.523 5.523 11 C 0.049 3.951 12 C -0.137 4.137 13 C 0.084 3.916 14 H 0.091 0.909 15 O -0.386 6.386 16 C 0.399 3.601 17 F -0.220 7.220 18 F -0.217 7.217 19 C 0.039 3.961 20 H 0.266 0.734 21 H 0.006 0.994 22 H -0.031 1.031 23 H 0.028 0.972 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.217 0.783 28 H 0.087 0.913 29 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 -15.974 2.914 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.249 5.249 11 C -0.079 4.079 12 C -0.175 4.175 13 C 0.027 3.973 14 H 0.109 0.891 15 O -0.307 6.307 16 C 0.309 3.691 17 F -0.202 7.202 18 F -0.199 7.199 19 C -0.089 4.089 20 H 0.074 0.926 21 H 0.025 0.975 22 H -0.014 1.014 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.233 0.767 28 H 0.105 0.895 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.704 -15.763 2.541 16.955 hybrid contribution -0.292 0.962 0.460 1.105 sum 5.412 -14.801 3.001 16.043 Atomic orbital electron populations 1.70089 1.07755 1.27995 1.51624 1.25944 0.95791 1.03318 0.94631 0.85280 0.78917 0.78300 0.77798 1.18715 1.20278 1.20296 1.21448 0.93674 0.90940 1.50320 0.91912 1.19577 0.90156 0.89055 0.93872 1.64764 1.26658 1.02013 1.31426 1.22651 0.99163 0.95924 0.90211 1.22884 1.02413 0.93703 0.98498 1.23027 0.94615 0.83371 0.96305 0.89058 1.88403 1.40527 1.16480 1.85324 1.23967 0.79755 0.92091 0.73320 1.93041 1.92190 1.95073 1.39876 1.93055 1.56856 1.96315 1.73684 1.23163 0.95505 0.88955 1.01302 0.92561 0.97538 1.01366 0.95303 0.90786 0.89885 0.89026 0.76676 0.89474 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 15 2 C 0.00 0.07 5.46 84.65 0.46 0.53 15 3 Si 0.97 44.57 29.54 68.60 2.03 46.60 15 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 7 C -0.53 -30.34 8.82 25.60 0.23 -30.11 15 8 H 0.06 3.56 7.78 -2.91 -0.02 3.54 15 9 C 0.20 10.94 4.52 85.56 0.39 11.33 15 10 N -0.52 -23.45 5.26 -887.56 -4.66 -28.11 15 11 C 0.05 1.91 6.15 86.44 0.53 2.44 15 12 C -0.14 -4.12 6.18 31.47 0.19 -3.92 15 13 C 0.08 2.54 3.22 31.80 0.10 2.64 15 14 H 0.09 2.66 7.29 -2.39 -0.02 2.65 15 15 O -0.39 -9.85 10.38 -148.98 -1.55 -11.40 15 16 C 0.40 7.24 6.27 113.37 0.71 7.95 15 17 F -0.22 -4.79 16.67 44.97 0.75 -4.04 15 18 F -0.22 -4.58 16.70 44.97 0.75 -3.83 15 19 C 0.04 1.46 6.27 86.65 0.54 2.00 15 20 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 21 H 0.01 0.38 8.11 -2.39 -0.02 0.36 15 22 H -0.03 -1.84 7.81 -2.39 -0.02 -1.86 15 23 H 0.03 1.22 7.57 -2.39 -0.02 1.20 15 24 H 0.07 2.87 8.14 -2.39 -0.02 2.85 15 25 H 0.08 2.35 8.07 -2.39 -0.02 2.33 15 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 27 H 0.22 1.59 8.14 -2.38 -0.02 1.57 15 28 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 29 H 0.04 1.58 8.02 -2.39 -0.02 1.56 15 Total: -1.00 -66.41 255.59 1.90 -64.51 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: 1.14 Total: -0.19 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 3.16 Total: -7.15 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -4.38 Total: -84.50 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.55 Total: -11.40 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 1.50 Total: -7.87 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.41 1.90 -64.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379362193.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.579 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds