Wall clock time and date at job start Mon Mar 30 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35964 * 117.00065 * 2 1 4 4 C 1.39183 * 119.87544 * 359.97438 * 3 2 1 5 5 C 1.38171 * 120.48031 * 179.74421 * 4 3 2 6 6 C 1.38491 * 120.20270 * 0.25622 * 5 4 3 7 7 O 1.35710 * 120.13210 * 179.97438 * 6 5 4 8 8 C 1.40901 * 119.73550 * 0.02562 * 6 5 4 9 9 C 1.41822 * 120.23231 * 180.02562 * 8 6 5 10 10 N 1.32096 * 120.00132 * 205.85102 * 9 8 6 11 11 C 1.32692 * 119.99958 * 8.74339 * 10 9 8 12 12 H 1.08000 * 120.00516 * 21.70828 * 11 10 9 13 13 C 1.40702 * 119.99784 * 201.71305 * 11 10 9 14 14 N 1.30552 * 120.00169 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99915 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47097 * 119.99844 * 15 13 11 18 18 H 1.48496 * 109.47391 * 240.00250 * 15 13 11 19 19 C 1.38031 * 119.87099 * 180.25574 * 3 2 1 20 20 H 1.09001 * 109.47428 * 300.00417 * 1 2 3 21 21 H 1.08997 * 109.46907 * 60.00318 * 1 2 3 22 22 H 1.09004 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.75485 * 0.02562 * 4 3 2 24 24 H 1.07997 * 119.89944 * 180.27662 * 5 4 3 25 25 H 0.96701 * 114.00024 * 84.88799 * 7 6 5 26 26 H 1.08002 * 119.99845 * 25.84666 * 9 8 6 27 27 H 0.97006 * 120.00182 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.10240 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2857 2.3771 -0.0005 5 6 1.8999 3.6147 0.0048 6 6 3.2818 3.7067 0.0053 7 8 3.8836 4.9230 0.0100 8 6 4.0604 2.5323 -0.0001 9 6 5.4762 2.6142 0.0010 10 7 6.1953 1.6271 -0.5023 11 6 5.5998 0.6423 -1.1628 12 1 4.6217 0.7955 -1.5944 13 6 6.2426 -0.6017 -1.3008 14 7 7.4247 -0.7872 -0.7786 15 14 5.4040 -1.9883 -2.2300 16 1 4.0801 -1.5266 -2.7192 17 1 6.2463 -2.3906 -3.3850 18 1 5.2187 -3.1502 -1.3241 19 6 3.4248 1.2806 -0.0053 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2075 2.3136 -0.0005 24 1 1.3006 4.5132 0.0088 25 1 3.9873 5.3072 0.8914 26 1 5.9665 3.4838 0.4133 27 1 7.8680 -1.6447 -0.8741 28 1 4.0126 0.3745 -0.0091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383707272.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:35 Heat of formation + Delta-G solvation = -36.412586 kcal Electronic energy + Delta-G solvation = -14646.309931 eV Core-core repulsion = 12049.263097 eV Total energy + Delta-G solvation = -2597.046834 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43868 -37.75675 -36.03749 -34.48925 -32.83917 -29.62554 -28.60401 -26.49558 -25.91248 -22.44204 -21.37198 -19.71313 -17.99578 -17.28364 -16.18790 -15.75694 -15.26194 -15.17784 -14.53082 -13.95246 -13.66473 -12.96792 -12.78020 -12.35238 -11.95254 -11.89798 -11.61437 -11.45282 -11.04784 -10.75862 -10.59521 -10.26397 -9.94906 -9.62042 -9.04686 -7.79938 -7.64421 -7.28821 -7.05563 -4.47121 1.99391 2.28344 2.82244 2.90580 3.00350 3.65247 3.68177 3.90635 4.55557 5.17081 5.36637 5.42599 5.47683 5.64602 5.65315 5.83212 6.23336 6.49820 6.61149 6.70634 6.89336 6.99233 7.11937 7.25564 7.45622 7.64523 7.77387 8.02822 8.14121 8.62953 8.70876 9.61409 10.36782 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.012025 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.739105 B = 2327.842698 C = 3410.092406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.323 6.323 3 C 0.123 3.877 4 C -0.264 4.264 5 C -0.098 4.098 6 C 0.006 3.994 7 O -0.490 6.490 8 C 0.033 3.967 9 C -0.183 4.183 10 N -0.330 5.330 11 C -0.226 4.226 12 H 0.085 0.915 13 C 0.066 3.934 14 N -0.724 5.724 15 Si 0.925 3.075 16 H -0.247 1.247 17 H -0.264 1.264 18 H -0.263 1.263 19 C -0.184 4.184 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.089 0.911 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.364 0.636 26 H 0.115 0.885 27 H 0.291 0.709 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 -0.886 0.956 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.237 6.237 3 C 0.079 3.921 4 C -0.284 4.284 5 C -0.117 4.117 6 C -0.040 4.040 7 O -0.297 6.297 8 C 0.030 3.970 9 C -0.349 4.349 10 N -0.040 5.040 11 C -0.387 4.387 12 H 0.102 0.898 13 C -0.163 4.163 14 N -0.345 5.345 15 Si 0.746 3.254 16 H -0.170 1.170 17 H -0.189 1.189 18 H -0.187 1.187 19 C -0.204 4.204 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.108 0.892 23 H 0.128 0.872 24 H 0.127 0.873 25 H 0.217 0.783 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.212 -1.365 0.440 8.337 hybrid contribution -1.530 -0.173 0.088 1.543 sum -9.743 -1.538 0.528 9.877 Atomic orbital electron populations 1.22871 0.79980 1.02666 1.00772 1.86060 1.20108 1.28070 1.89491 1.18900 0.92263 0.83181 0.97749 1.20606 0.98308 0.92005 1.17476 1.20825 0.93893 0.96536 1.00453 1.18618 0.89566 0.84390 1.11420 1.84821 1.81432 1.31419 1.32028 1.18897 0.95918 0.90360 0.91808 1.21654 0.87385 1.04250 1.21577 1.67418 1.38992 0.98423 0.99214 1.21393 1.01263 0.95397 1.20628 0.89804 1.26616 0.94322 1.00958 0.94393 1.69633 1.11240 1.25364 1.28259 0.85887 0.81018 0.78952 0.79544 1.16953 1.18865 1.18726 1.21027 0.90438 0.99599 1.09360 0.93328 0.93306 0.89242 0.87190 0.87276 0.78319 0.86752 0.89736 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 15 2 O -0.32 -6.32 10.49 -19.63 -0.21 -6.53 15 3 C 0.12 2.66 6.67 -39.31 -0.26 2.40 15 4 C -0.26 -5.11 9.03 -39.26 -0.35 -5.46 15 5 C -0.10 -1.94 9.96 -39.51 -0.39 -2.33 15 6 C 0.01 0.14 6.73 -38.48 -0.26 -0.12 15 7 O -0.49 -9.89 12.79 -18.83 -0.24 -10.13 15 8 C 0.03 0.83 5.36 -106.71 -0.57 0.26 15 9 C -0.18 -4.90 10.58 -16.07 -0.17 -5.07 15 10 N -0.33 -9.46 10.06 -11.47 -0.12 -9.57 15 11 C -0.23 -6.10 6.78 -16.25 -0.11 -6.21 15 12 H 0.08 2.28 5.38 -52.49 -0.28 2.00 15 13 C 0.07 1.61 5.53 -17.17 -0.09 1.51 15 14 N -0.72 -18.24 13.58 55.59 0.76 -17.48 15 15 Si 0.92 18.01 29.57 -169.99 -5.03 12.99 15 16 H -0.25 -4.89 7.11 56.52 0.40 -4.49 15 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 18 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 19 C -0.18 -4.48 7.45 -38.85 -0.29 -4.77 15 20 H 0.05 0.60 7.65 -51.93 -0.40 0.21 15 21 H 0.05 0.62 7.65 -51.93 -0.40 0.22 15 22 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 23 H 0.11 1.78 6.26 -52.49 -0.33 1.45 15 24 H 0.11 1.83 8.06 -52.49 -0.42 1.41 15 25 H 0.36 5.47 9.06 45.56 0.41 5.89 15 26 H 0.11 2.93 7.82 -52.49 -0.41 2.52 15 27 H 0.29 6.36 8.29 -40.82 -0.34 6.02 15 28 H 0.15 3.82 5.35 -52.49 -0.28 3.54 15 LS Contribution 249.37 15.07 3.76 3.76 Total: -1.00 -30.74 249.37 -4.25 -35.00 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -1.66 Total: 10.31 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.51 Total: -18.34 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.64 Total: -27.05 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.45 Total: -16.65 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.74 -4.25 -35.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383707272.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.415 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds