Wall clock time and date at job start Mon Mar 30 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35964 * 117.00065 * 2 1 4 4 C 1.39183 * 119.87544 * 359.97438 * 3 2 1 5 5 C 1.38171 * 120.48031 * 179.74421 * 4 3 2 6 6 C 1.38491 * 120.20270 * 0.25622 * 5 4 3 7 7 O 1.35710 * 120.13210 * 179.97438 * 6 5 4 8 8 C 1.40901 * 119.73550 * 0.02562 * 6 5 4 9 9 C 1.41822 * 120.23231 * 180.02562 * 8 6 5 10 10 N 1.32096 * 120.00132 * 205.85102 * 9 8 6 11 11 C 1.32692 * 119.99958 * 8.74339 * 10 9 8 12 12 H 1.08000 * 120.00516 * 21.70828 * 11 10 9 13 13 C 1.40702 * 119.99784 * 201.71305 * 11 10 9 14 14 N 1.30552 * 120.00169 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99915 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47097 * 119.99844 * 15 13 11 18 18 H 1.48496 * 109.47391 * 240.00250 * 15 13 11 19 19 C 1.38031 * 119.87099 * 180.25574 * 3 2 1 20 20 H 1.09001 * 109.47428 * 300.00417 * 1 2 3 21 21 H 1.08997 * 109.46907 * 60.00318 * 1 2 3 22 22 H 1.09004 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.75485 * 0.02562 * 4 3 2 24 24 H 1.07997 * 119.89944 * 180.27662 * 5 4 3 25 25 H 0.96701 * 114.00024 * 84.88799 * 7 6 5 26 26 H 1.08002 * 119.99845 * 25.84666 * 9 8 6 27 27 H 0.97006 * 120.00182 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.10240 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2857 2.3771 -0.0005 5 6 1.8999 3.6147 0.0048 6 6 3.2818 3.7067 0.0053 7 8 3.8836 4.9230 0.0100 8 6 4.0604 2.5323 -0.0001 9 6 5.4762 2.6142 0.0010 10 7 6.1953 1.6271 -0.5023 11 6 5.5998 0.6423 -1.1628 12 1 4.6217 0.7955 -1.5944 13 6 6.2426 -0.6017 -1.3008 14 7 7.4247 -0.7872 -0.7786 15 14 5.4040 -1.9883 -2.2300 16 1 4.0801 -1.5266 -2.7192 17 1 6.2463 -2.3906 -3.3850 18 1 5.2187 -3.1502 -1.3241 19 6 3.4248 1.2806 -0.0053 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2075 2.3136 -0.0005 24 1 1.3006 4.5132 0.0088 25 1 3.9873 5.3072 0.8914 26 1 5.9665 3.4838 0.4133 27 1 7.8680 -1.6447 -0.8741 28 1 4.0126 0.3745 -0.0091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383707272.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:35 Heat of formation + Delta-G solvation = -60.057588 kcal Electronic energy + Delta-G solvation = -14647.335255 eV Core-core repulsion = 12049.263097 eV Total energy + Delta-G solvation = -2598.072158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05984 -39.32707 -37.85218 -36.15400 -34.68633 -31.31988 -30.25922 -27.80797 -27.75547 -24.22160 -23.02967 -21.50358 -19.76027 -18.85501 -17.96632 -17.39699 -16.90844 -16.54329 -16.13229 -15.61762 -15.20059 -14.69021 -14.52783 -14.04239 -13.69147 -13.40219 -13.05936 -12.91358 -12.78834 -12.25601 -12.13505 -11.88851 -11.57947 -11.25767 -10.87522 -9.66422 -9.54460 -9.09173 -8.74197 -6.43805 0.26750 0.61058 1.24357 1.28997 1.48589 1.90561 2.07282 2.53726 2.83397 3.44420 3.66504 4.05186 4.25985 4.41160 4.45969 4.63044 4.70378 4.74518 4.82424 4.87901 5.11691 5.32755 5.45301 5.53447 5.65032 5.79719 5.96186 6.18345 6.63125 6.75430 7.14040 7.84831 8.41358 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.012025 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.739105 B = 2327.842698 C = 3410.092406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.119 3.881 4 C -0.239 4.239 5 C -0.094 4.094 6 C 0.007 3.993 7 O -0.500 6.500 8 C 0.001 3.999 9 C -0.203 4.203 10 N -0.371 5.371 11 C -0.257 4.257 12 H 0.073 0.927 13 C 0.028 3.972 14 N -0.766 5.766 15 Si 0.998 3.002 16 H -0.256 1.256 17 H -0.243 1.243 18 H -0.248 1.248 19 C -0.203 4.203 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.118 0.882 23 H 0.154 0.846 24 H 0.150 0.850 25 H 0.389 0.611 26 H 0.111 0.889 27 H 0.306 0.694 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -1.079 0.677 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.074 3.926 4 C -0.259 4.259 5 C -0.112 4.112 6 C -0.039 4.039 7 O -0.310 6.310 8 C -0.002 4.002 9 C -0.371 4.371 10 N -0.081 5.081 11 C -0.416 4.416 12 H 0.091 0.909 13 C -0.196 4.196 14 N -0.389 5.389 15 Si 0.814 3.186 16 H -0.179 1.179 17 H -0.167 1.167 18 H -0.172 1.172 19 C -0.223 4.223 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.136 0.864 23 H 0.172 0.828 24 H 0.168 0.832 25 H 0.245 0.755 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.500 -1.558 0.178 11.607 hybrid contribution -0.734 0.044 0.284 0.788 sum -12.234 -1.514 0.462 12.336 Atomic orbital electron populations 1.23317 0.76653 1.05280 1.02235 1.86042 1.23495 1.27188 1.89143 1.18938 0.91516 0.84947 0.97149 1.21106 1.00365 0.90778 1.13620 1.21220 0.92881 0.98339 0.98795 1.18754 0.90647 0.84044 1.10466 1.84734 1.81524 1.30494 1.34230 1.18956 0.95333 0.91980 0.93960 1.21795 0.88978 1.04185 1.22121 1.67413 1.40268 0.99819 1.00623 1.21472 1.01592 0.96501 1.22063 0.90931 1.27617 0.94772 1.02490 0.94761 1.69630 1.12637 1.27034 1.29575 0.84898 0.79417 0.75560 0.78750 1.17908 1.16686 1.17175 1.20890 0.92089 0.98619 1.10750 0.91538 0.91883 0.86419 0.82816 0.83239 0.75494 0.87114 0.88251 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 15 2 O -0.34 -12.68 10.49 -93.14 -0.98 -13.66 15 3 C 0.12 4.94 6.67 22.45 0.15 5.09 15 4 C -0.24 -8.24 9.03 22.48 0.20 -8.04 15 5 C -0.09 -3.33 9.96 22.31 0.22 -3.11 15 6 C 0.01 0.32 6.73 22.98 0.15 0.47 15 7 O -0.50 -19.48 12.79 -90.31 -1.15 -20.63 15 8 C 0.00 0.03 5.36 -21.22 -0.11 -0.09 15 9 C -0.20 -11.46 10.58 85.54 0.91 -10.55 15 10 N -0.37 -22.60 10.06 -190.19 -1.91 -24.51 15 11 C -0.26 -14.67 6.78 85.17 0.58 -14.09 15 12 H 0.07 4.19 5.38 -2.91 -0.02 4.17 15 13 C 0.03 1.41 5.53 85.49 0.47 1.88 15 14 N -0.77 -40.14 13.58 21.97 0.30 -39.84 15 15 Si 1.00 37.52 29.57 68.60 2.03 39.55 15 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 17 H -0.24 -8.27 7.11 99.48 0.71 -7.56 15 18 H -0.25 -8.64 7.11 99.48 0.71 -7.94 15 19 C -0.20 -10.10 7.45 22.74 0.17 -9.93 15 20 H 0.07 1.31 7.65 -2.39 -0.02 1.29 15 21 H 0.06 1.29 7.65 -2.39 -0.02 1.27 15 22 H 0.12 2.05 8.14 -2.39 -0.02 2.04 15 23 H 0.15 3.96 6.26 -2.91 -0.02 3.94 15 24 H 0.15 4.14 8.06 -2.91 -0.02 4.11 15 25 H 0.39 11.01 9.06 -74.06 -0.67 10.34 15 26 H 0.11 6.02 7.82 -2.91 -0.02 6.00 15 27 H 0.31 13.70 8.29 -92.70 -0.77 12.93 15 28 H 0.12 6.61 5.35 -2.91 -0.02 6.59 15 Total: -1.00 -70.49 249.37 2.66 -67.82 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.53 Total: 28.08 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.85 Total: -36.80 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -1.61 Total: -64.35 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -2.13 Total: -34.29 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -70.49 2.66 -67.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383707272.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.765 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds