Wall clock time and date at job start Mon Mar 30 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36000 * 117.00158 * 2 1 4 4 C 1.38620 * 119.97579 * 0.02562 * 3 2 1 5 5 C 1.38676 * 120.47911 * 179.97438 * 4 3 2 6 6 C 1.37588 * 120.40925 * 0.02562 * 5 4 3 7 7 C 1.40456 * 119.93499 * 359.97438 * 6 5 4 8 8 C 1.46115 * 120.23216 * 180.02562 * 7 6 5 9 9 N 1.32093 * 119.99881 * 26.47920 * 8 7 6 10 10 C 1.32699 * 120.00109 * 9.29521 * 9 8 7 11 11 H 1.08000 * 119.99765 * 30.15779 * 10 9 8 12 12 C 1.40691 * 120.00256 * 210.16170 * 10 9 8 13 13 N 1.30554 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00250 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46955 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47340 * 119.99832 * 14 12 10 17 17 H 1.48501 * 109.47115 * 240.00049 * 14 12 10 18 18 C 1.38934 * 119.97421 * 179.72282 * 3 2 1 19 19 O 1.35752 * 120.20150 * 0.02562 * 18 3 2 20 20 H 1.09008 * 109.47374 * 59.99689 * 1 2 3 21 21 H 1.09004 * 109.47507 * 299.99805 * 1 2 3 22 22 H 1.09001 * 109.47466 * 179.97438 * 1 2 3 23 23 H 1.08007 * 119.75807 * 0.02562 * 4 3 2 24 24 H 1.07989 * 119.79214 * 180.02562 * 5 4 3 25 25 H 1.07997 * 120.03251 * 179.97438 * 6 5 4 26 26 H 1.07996 * 120.00498 * 206.46611 * 8 7 6 27 27 H 0.96998 * 120.00230 * 180.02562 * 13 12 10 28 28 H 0.96697 * 113.99715 * 85.40801 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2910 2.3740 0.0005 5 6 1.9097 3.6151 0.0011 6 6 3.2824 3.7089 0.0006 7 6 4.0647 2.5424 0.0000 8 6 5.5229 2.6345 0.0000 9 7 6.1175 3.6978 0.5106 10 6 5.4092 4.5938 1.1862 11 1 4.5322 4.2856 1.7359 12 6 5.8006 5.9452 1.1862 13 7 6.8611 6.3177 0.5220 14 14 4.8039 7.2063 2.1379 15 1 3.6583 6.5335 2.8013 16 1 5.6654 7.8455 3.1647 17 1 4.2953 8.2425 1.2036 18 6 3.4339 1.2838 0.0058 19 8 4.1767 0.1476 0.0110 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.2127 2.3125 0.0014 24 1 1.3104 4.5134 0.0019 25 1 3.7579 4.6786 0.0006 26 1 6.1147 1.8332 -0.4172 27 1 7.1312 7.2493 0.5224 28 1 4.3364 -0.2218 -0.8682 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383713247.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:52 Heat of formation + Delta-G solvation = -39.212812 kcal Electronic energy + Delta-G solvation = -14554.529025 eV Core-core repulsion = 11957.360765 eV Total energy + Delta-G solvation = -2597.168261 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.55735 -37.37870 -35.99366 -34.83325 -32.63164 -29.08638 -28.86293 -26.96097 -25.68228 -22.22247 -21.49839 -19.76788 -18.03736 -16.97645 -16.47079 -15.70295 -15.37340 -15.14329 -14.56159 -13.96756 -13.62260 -13.28475 -12.81501 -12.46486 -11.96668 -11.78319 -11.63405 -11.26129 -11.17306 -10.65677 -10.52491 -10.42848 -9.90583 -9.77867 -8.95801 -7.86806 -7.44424 -7.34111 -7.14601 -4.41677 1.92276 2.25547 2.80431 2.90275 2.97968 3.63334 3.71593 3.75698 4.52918 5.07403 5.27268 5.34586 5.38969 5.56506 5.65730 5.87638 6.17906 6.33086 6.53405 6.67604 6.88299 6.90071 7.07397 7.29967 7.44050 7.62854 7.79582 7.90759 8.06159 8.61504 8.72195 9.72331 10.40061 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039650 B = 0.008417 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.003104 B = 3325.880905 C = 3887.898131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.102 3.898 4 C -0.256 4.256 5 C -0.090 4.090 6 C -0.161 4.161 7 C 0.021 3.979 8 C -0.159 4.159 9 N -0.328 5.328 10 C -0.249 4.249 11 H 0.076 0.924 12 C 0.066 3.934 13 N -0.739 5.739 14 Si 0.922 3.078 15 H -0.251 1.251 16 H -0.265 1.265 17 H -0.265 1.265 18 C 0.021 3.979 19 O -0.480 6.480 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.142 0.858 26 H 0.117 0.883 27 H 0.289 0.711 28 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 -2.381 -1.175 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.057 3.943 4 C -0.275 4.275 5 C -0.108 4.108 6 C -0.181 4.181 7 C 0.018 3.982 8 C -0.332 4.332 9 N -0.038 5.038 10 C -0.406 4.406 11 H 0.094 0.906 12 C -0.160 4.160 13 N -0.361 5.361 14 Si 0.744 3.256 15 H -0.174 1.174 16 H -0.190 1.190 17 H -0.190 1.190 18 C -0.027 4.027 19 O -0.286 6.286 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.108 0.892 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.159 0.841 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.670 -2.076 -0.652 8.939 hybrid contribution -1.625 0.404 -0.029 1.675 sum -10.295 -1.672 -0.681 10.453 Atomic orbital electron populations 1.22898 0.79948 1.02733 1.00870 1.86080 1.20097 1.27561 1.89466 1.19362 0.91678 0.83947 0.99321 1.20737 0.98428 0.92188 1.16187 1.20683 0.94791 0.95929 0.99423 1.21666 0.92537 0.99744 1.04110 1.20098 0.96397 0.90002 0.91700 1.22859 0.87075 1.04166 1.19068 1.67514 1.37417 0.99146 0.99703 1.20962 1.07037 0.92316 1.20304 0.90646 1.26453 0.95079 0.99847 0.94638 1.69619 1.18983 1.19358 1.28187 0.85952 0.80525 0.79329 0.79832 1.17370 1.18964 1.18992 1.18093 0.85181 0.86283 1.13104 1.84834 1.72659 1.39075 1.32066 0.93293 0.93236 0.89154 0.87000 0.87210 0.84075 0.86587 0.90029 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 15 2 O -0.32 -5.80 10.28 -34.39 -0.35 -6.16 15 3 C 0.10 2.08 6.69 -39.18 -0.26 1.82 15 4 C -0.26 -4.82 9.04 -39.28 -0.36 -5.17 15 5 C -0.09 -1.78 10.01 -39.66 -0.40 -2.17 15 6 C -0.16 -3.70 7.76 -38.98 -0.30 -4.00 15 7 C 0.02 0.52 5.46 -104.94 -0.57 -0.05 15 8 C -0.16 -4.21 10.77 -14.28 -0.15 -4.36 15 9 N -0.33 -9.31 10.06 -10.29 -0.10 -9.42 15 10 C -0.25 -6.64 6.47 -16.25 -0.11 -6.74 15 11 H 0.08 2.01 6.09 -52.49 -0.32 1.69 15 12 C 0.07 1.60 5.52 -17.17 -0.09 1.50 15 13 N -0.74 -18.69 13.58 55.59 0.76 -17.94 15 14 Si 0.92 17.63 29.57 -169.99 -5.03 12.60 15 15 H -0.25 -4.78 7.11 56.52 0.40 -4.38 15 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 17 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 18 C 0.02 0.47 6.75 -38.36 -0.26 0.21 15 19 O -0.48 -10.13 12.65 -33.62 -0.43 -10.55 15 20 H 0.05 0.57 7.66 -51.92 -0.40 0.17 15 21 H 0.05 0.60 7.65 -51.93 -0.40 0.20 15 22 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.11 1.75 6.26 -52.48 -0.33 1.42 15 24 H 0.11 1.84 8.06 -52.49 -0.42 1.41 15 25 H 0.14 3.40 5.54 -52.49 -0.29 3.10 15 26 H 0.12 2.93 7.91 -52.49 -0.41 2.51 15 27 H 0.29 6.37 8.29 -40.82 -0.34 6.03 15 28 H 0.37 5.94 9.06 45.56 0.41 6.36 15 LS Contribution 250.39 15.07 3.77 3.77 Total: -1.00 -30.61 250.39 -4.61 -35.22 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -1.72 Total: 10.04 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.51 Total: -17.57 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.65 Total: -27.35 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.78 Total: -16.71 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.61 -4.61 -35.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383713247.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.994 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds