Wall clock time and date at job start Mon Mar 30 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36000 * 117.00158 * 2 1 4 4 C 1.38620 * 119.97579 * 0.02562 * 3 2 1 5 5 C 1.38676 * 120.47911 * 179.97438 * 4 3 2 6 6 C 1.37588 * 120.40925 * 0.02562 * 5 4 3 7 7 C 1.40456 * 119.93499 * 359.97438 * 6 5 4 8 8 C 1.46115 * 120.23216 * 180.02562 * 7 6 5 9 9 N 1.32093 * 119.99881 * 26.47920 * 8 7 6 10 10 C 1.32699 * 120.00109 * 9.29521 * 9 8 7 11 11 H 1.08000 * 119.99765 * 30.15779 * 10 9 8 12 12 C 1.40691 * 120.00256 * 210.16170 * 10 9 8 13 13 N 1.30554 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00250 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46955 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47340 * 119.99832 * 14 12 10 17 17 H 1.48501 * 109.47115 * 240.00049 * 14 12 10 18 18 C 1.38934 * 119.97421 * 179.72282 * 3 2 1 19 19 O 1.35752 * 120.20150 * 0.02562 * 18 3 2 20 20 H 1.09008 * 109.47374 * 59.99689 * 1 2 3 21 21 H 1.09004 * 109.47507 * 299.99805 * 1 2 3 22 22 H 1.09001 * 109.47466 * 179.97438 * 1 2 3 23 23 H 1.08007 * 119.75807 * 0.02562 * 4 3 2 24 24 H 1.07989 * 119.79214 * 180.02562 * 5 4 3 25 25 H 1.07997 * 120.03251 * 179.97438 * 6 5 4 26 26 H 1.07996 * 120.00498 * 206.46611 * 8 7 6 27 27 H 0.96998 * 120.00230 * 180.02562 * 13 12 10 28 28 H 0.96697 * 113.99715 * 85.40801 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2910 2.3740 0.0005 5 6 1.9097 3.6151 0.0011 6 6 3.2824 3.7089 0.0006 7 6 4.0647 2.5424 0.0000 8 6 5.5229 2.6345 0.0000 9 7 6.1175 3.6978 0.5106 10 6 5.4092 4.5938 1.1862 11 1 4.5322 4.2856 1.7359 12 6 5.8006 5.9452 1.1862 13 7 6.8611 6.3177 0.5220 14 14 4.8039 7.2063 2.1379 15 1 3.6583 6.5335 2.8013 16 1 5.6654 7.8455 3.1647 17 1 4.2953 8.2425 1.2036 18 6 3.4339 1.2838 0.0058 19 8 4.1767 0.1476 0.0110 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.2127 2.3125 0.0014 24 1 1.3104 4.5134 0.0019 25 1 3.7579 4.6786 0.0006 26 1 6.1147 1.8332 -0.4172 27 1 7.1312 7.2493 0.5224 28 1 4.3364 -0.2218 -0.8682 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383713247.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:52 Heat of formation + Delta-G solvation = -61.850629 kcal Electronic energy + Delta-G solvation = -14555.510675 eV Core-core repulsion = 11957.360765 eV Total energy + Delta-G solvation = -2598.149910 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10477 -38.94514 -37.72836 -36.56197 -34.48693 -30.76863 -30.42026 -28.33881 -27.40596 -23.95629 -23.12384 -21.51927 -19.72537 -18.60851 -18.21724 -17.27874 -16.78558 -16.73287 -16.05394 -15.62774 -15.17309 -14.83913 -14.54121 -14.15229 -13.70710 -13.27119 -13.05150 -12.85871 -12.64789 -12.14585 -11.99005 -11.89500 -11.64580 -11.42562 -10.79754 -9.76625 -9.26171 -8.96817 -8.92842 -6.37287 0.24632 0.60982 1.27041 1.33651 1.52962 1.92568 2.11578 2.43839 2.84352 3.39407 3.55176 4.09160 4.30657 4.40930 4.43956 4.56734 4.64073 4.74278 4.84860 4.89977 5.04870 5.24358 5.40780 5.58438 5.72785 5.81708 6.02851 6.18717 6.48611 6.78307 7.07973 7.95519 8.47416 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039650 B = 0.008417 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.003104 B = 3325.880905 C = 3887.898131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.100 3.900 4 C -0.234 4.234 5 C -0.084 4.084 6 C -0.177 4.177 7 C -0.010 4.010 8 C -0.179 4.179 9 N -0.371 5.371 10 C -0.276 4.276 11 H 0.067 0.933 12 C 0.027 3.973 13 N -0.783 5.783 14 Si 0.999 3.001 15 H -0.251 1.251 16 H -0.253 1.253 17 H -0.248 1.248 18 C 0.011 3.989 19 O -0.493 6.493 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.120 0.880 23 H 0.156 0.844 24 H 0.147 0.853 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.302 0.698 28 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 -1.999 -0.822 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.054 3.946 4 C -0.253 4.253 5 C -0.102 4.102 6 C -0.197 4.197 7 C -0.013 4.013 8 C -0.353 4.353 9 N -0.080 5.080 10 C -0.432 4.432 11 H 0.085 0.915 12 C -0.195 4.195 13 N -0.407 5.407 14 Si 0.815 3.185 15 H -0.174 1.174 16 H -0.177 1.177 17 H -0.172 1.172 18 C -0.036 4.036 19 O -0.303 6.303 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.138 0.862 23 H 0.173 0.827 24 H 0.165 0.835 25 H 0.141 0.859 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.081 -1.716 -0.321 12.207 hybrid contribution -0.730 0.041 -0.225 0.765 sum -12.811 -1.675 -0.545 12.932 Atomic orbital electron populations 1.23330 0.76781 1.05336 1.02157 1.86069 1.23259 1.26344 1.89040 1.19378 0.91076 0.85544 0.98587 1.21223 1.00504 0.90958 1.12639 1.21063 0.93535 0.98008 0.97623 1.21615 0.94130 0.98542 1.05436 1.20078 0.95500 0.91664 0.94086 1.22973 0.88806 1.04086 1.19393 1.67530 1.38814 1.00515 1.01152 1.21070 1.07512 0.93379 1.21226 0.91536 1.27522 0.95988 1.00929 0.95017 1.69640 1.20685 1.20837 1.29501 0.84880 0.78722 0.76334 0.78544 1.17360 1.17665 1.17164 1.18226 0.86640 0.85883 1.12878 1.84749 1.72880 1.38714 1.33932 0.91581 0.92121 0.86227 0.82695 0.83515 0.85892 0.87191 0.88666 0.75928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 15 2 O -0.33 -11.07 10.28 -79.54 -0.82 -11.89 15 3 C 0.10 3.83 6.69 22.53 0.15 3.98 15 4 C -0.23 -7.85 9.04 22.47 0.20 -7.65 15 5 C -0.08 -3.09 10.01 22.22 0.22 -2.86 15 6 C -0.18 -8.17 7.76 22.66 0.18 -7.99 15 7 C -0.01 -0.52 5.46 -20.07 -0.11 -0.63 15 8 C -0.18 -9.99 10.77 86.70 0.93 -9.06 15 9 N -0.37 -22.24 10.06 -186.46 -1.88 -24.12 15 10 C -0.28 -15.33 6.47 85.16 0.55 -14.78 15 11 H 0.07 3.70 6.09 -2.91 -0.02 3.69 15 12 C 0.03 1.35 5.52 85.48 0.47 1.82 15 13 N -0.78 -40.75 13.58 21.97 0.30 -40.46 15 14 Si 1.00 35.86 29.57 68.60 2.03 37.89 15 15 H -0.25 -8.86 7.11 99.48 0.71 -8.15 15 16 H -0.25 -8.50 7.11 99.48 0.71 -7.79 15 17 H -0.25 -8.15 7.11 99.48 0.71 -7.44 15 18 C 0.01 0.49 6.75 23.06 0.16 0.65 15 19 O -0.49 -21.00 12.65 -76.77 -0.97 -21.97 15 20 H 0.07 1.18 7.66 -2.38 -0.02 1.16 15 21 H 0.06 1.16 7.65 -2.39 -0.02 1.14 15 22 H 0.12 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.16 3.87 6.26 -2.91 -0.02 3.85 15 24 H 0.15 4.25 8.06 -2.92 -0.02 4.23 15 25 H 0.12 6.08 5.54 -2.91 -0.02 6.06 15 26 H 0.11 5.96 7.91 -2.91 -0.02 5.93 15 27 H 0.30 13.55 8.29 -92.71 -0.77 12.78 15 28 H 0.39 12.62 9.06 -74.06 -0.67 11.95 15 Total: -1.00 -69.44 250.39 3.06 -66.38 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.53 Total: 29.20 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.87 Total: -35.04 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -1.58 Total: -64.57 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.79 Total: -33.86 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -69.44 3.06 -66.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383713247.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.529 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds