Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.31669 * 125.85662 * 260.24477 * 3 2 1 5 5 C 1.33275 * 109.22186 * 179.86755 * 4 3 2 6 6 C 1.35380 * 108.40330 * 0.39838 * 5 4 3 7 7 N 1.36249 * 107.07954 * 359.76137 * 6 5 4 8 8 C 1.46498 * 126.49264 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47247 * 264.95259 * 8 7 6 10 10 O 1.42894 * 109.47093 * 180.02562 * 9 8 7 11 11 C 1.42905 * 114.00060 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47280 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99975 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00070 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00132 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47104 * 89.99832 * 16 14 12 18 18 H 1.48500 * 109.47087 * 210.00033 * 16 14 12 19 19 H 1.48501 * 109.46611 * 329.99892 * 16 14 12 20 20 H 1.08001 * 125.79741 * 180.13632 * 5 4 3 21 21 H 1.07998 * 126.45728 * 179.71866 * 6 5 4 22 22 H 1.09000 * 109.47115 * 24.95969 * 8 7 6 23 23 H 1.08999 * 109.47001 * 144.95762 * 8 7 6 24 24 H 1.09002 * 109.46926 * 300.00568 * 9 8 7 25 25 H 1.08999 * 109.46709 * 60.00324 * 9 8 7 26 26 H 1.08998 * 109.46700 * 300.00255 * 11 10 9 27 27 H 1.09002 * 109.46861 * 60.00036 * 11 10 9 28 28 H 0.97001 * 119.99992 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3392 0.1818 1.0517 5 6 4.6162 0.1149 0.6762 6 6 4.6581 -0.1075 -0.6585 7 7 3.3687 -0.1808 -1.0927 8 6 2.9248 -0.4110 -2.4697 9 6 2.6484 0.9323 -3.1478 10 8 2.2148 0.7077 -4.4908 11 6 1.9290 1.9046 -5.2172 12 6 1.4825 1.5510 -6.6124 13 1 1.4234 0.5158 -6.9143 14 6 1.1505 2.5491 -7.5037 15 7 1.2230 3.8098 -7.1362 16 14 0.5978 2.1109 -9.2335 17 1 -0.8775 1.9435 -9.2542 18 1 0.9858 3.1982 -10.1676 19 1 1.2459 0.8425 -9.6537 20 1 5.4722 0.2241 1.3256 21 1 5.5461 -0.2072 -1.2650 22 1 3.7028 -0.9419 -3.0183 23 1 2.0132 -1.0086 -2.4624 24 1 1.8704 1.4631 -2.5991 25 1 3.5600 1.5299 -3.1551 26 1 1.1365 2.4561 -4.7113 27 1 2.8259 2.5219 -5.2678 28 1 0.9890 4.5120 -7.7632 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385250181.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = 47.168248 kcal Electronic energy + Delta-G solvation = -13834.872288 eV Core-core repulsion = 11273.742542 eV Total energy + Delta-G solvation = -2561.129746 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.41969 -37.25051 -36.64477 -34.59096 -32.80600 -30.31696 -29.36461 -27.03674 -23.95012 -22.80000 -22.42693 -21.65208 -18.57692 -16.67710 -16.56695 -15.81769 -15.52486 -15.32919 -14.65332 -14.44831 -13.79959 -13.69203 -13.24892 -13.11445 -12.94061 -12.87082 -12.23654 -11.37564 -11.13059 -10.99220 -10.88115 -10.42531 -10.28435 -9.93696 -9.29110 -9.07935 -8.76435 -8.39107 -6.22921 -4.26293 1.11556 1.94539 2.45272 2.62291 3.23398 3.28673 3.32852 3.38058 3.45634 4.22758 4.48156 4.52046 4.69121 5.06947 5.13846 5.22454 5.25465 5.36148 5.60089 5.81699 5.97140 6.34767 6.58106 6.87452 7.20651 7.22708 7.59038 7.63741 7.96339 8.29780 8.84443 9.39036 10.88411 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047524 B = 0.005108 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.034391 B = 5480.736830 C = 5740.908697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C 0.294 3.706 3 C 0.251 3.749 4 N -0.434 5.434 5 C -0.024 4.024 6 C -0.009 4.009 7 N -0.419 5.419 8 C 0.098 3.902 9 C 0.051 3.949 10 O -0.391 6.391 11 C 0.198 3.802 12 C -0.521 4.521 13 H 0.068 0.932 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.911 3.089 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.271 1.271 20 H 0.184 0.816 21 H 0.191 0.809 22 H 0.114 0.886 23 H 0.102 0.898 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.396 -7.315 11.047 15.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.024 4.024 3 C -0.007 4.007 4 N -0.154 5.154 5 C -0.176 4.176 6 C -0.147 4.147 7 N -0.102 5.102 8 C -0.024 4.024 9 C -0.028 4.028 10 O -0.311 6.311 11 C 0.124 3.876 12 C -0.559 4.559 13 H 0.086 0.914 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.737 3.263 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.195 1.195 20 H 0.201 0.799 21 H 0.208 0.792 22 H 0.132 0.868 23 H 0.121 0.879 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.242 -7.195 11.497 14.930 hybrid contribution 0.548 0.172 -1.630 1.729 sum 6.790 -7.023 9.867 13.884 Atomic orbital electron populations 1.81332 1.10500 1.08045 1.04978 1.23289 0.89578 0.94368 0.95147 1.17186 0.86147 1.13422 0.83897 1.70304 1.02583 1.15962 1.26567 1.22458 0.94177 1.07756 0.93256 1.23164 0.86858 1.07362 0.97298 1.45482 1.06393 1.49965 1.08395 1.21998 1.03538 0.99580 0.77288 1.22412 0.99229 0.93906 0.87237 1.87809 1.87086 1.35544 1.20625 1.20299 0.94976 0.81405 0.90954 1.21003 1.45510 0.94062 0.95323 0.91372 1.24960 0.95348 0.94637 0.99449 1.69954 1.48120 0.99179 1.36214 0.86292 0.79029 0.78205 0.82726 1.20345 1.20953 1.19547 0.79890 0.79235 0.86826 0.87929 0.93833 0.93173 0.97399 0.97295 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.99 18.54 41.83 0.78 -5.22 15 2 C 0.29 4.32 15.42 -22.47 -0.35 3.97 15 3 C 0.25 3.34 7.66 -156.27 -1.20 2.15 15 4 N -0.43 -5.64 11.27 -12.44 -0.14 -5.78 15 5 C -0.02 -0.23 11.84 -17.94 -0.21 -0.44 15 6 C -0.01 -0.08 11.57 -16.61 -0.19 -0.27 15 7 N -0.42 -4.83 2.78 -115.83 -0.32 -5.15 15 8 C 0.10 1.19 6.27 -4.04 -0.03 1.17 15 9 C 0.05 0.85 6.26 37.16 0.23 1.08 15 10 O -0.39 -8.71 10.33 -35.23 -0.36 -9.07 15 11 C 0.20 5.21 5.69 36.00 0.20 5.41 15 12 C -0.52 -14.86 9.43 -34.44 -0.32 -15.19 15 13 H 0.07 1.91 7.81 -52.49 -0.41 1.50 15 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 15 N -0.90 -26.27 13.29 55.43 0.74 -25.53 15 16 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 15 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 20 H 0.18 1.12 8.06 -52.49 -0.42 0.69 15 21 H 0.19 0.98 8.06 -52.49 -0.42 0.56 15 22 H 0.11 1.14 8.13 -51.93 -0.42 0.72 15 23 H 0.10 1.26 7.95 -51.93 -0.41 0.85 15 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 15 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 LS Contribution 267.55 15.07 4.03 4.03 Total: -1.00 -32.11 267.55 -5.18 -37.28 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -2.92 Total: -6.28 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.96 Total: -0.57 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 1.05 Total: -41.68 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.36 Total: -9.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.11 -5.18 -37.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385250181.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.452 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds