Wall clock time and date at job start Mon Mar 30 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.31669 * 125.85662 * 260.24477 * 3 2 1 5 5 C 1.33275 * 109.22186 * 179.86755 * 4 3 2 6 6 C 1.35380 * 108.40330 * 0.39838 * 5 4 3 7 7 N 1.36249 * 107.07954 * 359.76137 * 6 5 4 8 8 C 1.46498 * 126.49264 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47247 * 264.95259 * 8 7 6 10 10 O 1.42894 * 109.47093 * 180.02562 * 9 8 7 11 11 C 1.42905 * 114.00060 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47280 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99975 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00070 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00132 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47104 * 89.99832 * 16 14 12 18 18 H 1.48500 * 109.47087 * 210.00033 * 16 14 12 19 19 H 1.48501 * 109.46611 * 329.99892 * 16 14 12 20 20 H 1.08001 * 125.79741 * 180.13632 * 5 4 3 21 21 H 1.07998 * 126.45728 * 179.71866 * 6 5 4 22 22 H 1.09000 * 109.47115 * 24.95969 * 8 7 6 23 23 H 1.08999 * 109.47001 * 144.95762 * 8 7 6 24 24 H 1.09002 * 109.46926 * 300.00568 * 9 8 7 25 25 H 1.08999 * 109.46709 * 60.00324 * 9 8 7 26 26 H 1.08998 * 109.46700 * 300.00255 * 11 10 9 27 27 H 1.09002 * 109.46861 * 60.00036 * 11 10 9 28 28 H 0.97001 * 119.99992 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3392 0.1818 1.0517 5 6 4.6162 0.1149 0.6762 6 6 4.6581 -0.1075 -0.6585 7 7 3.3687 -0.1808 -1.0927 8 6 2.9248 -0.4110 -2.4697 9 6 2.6484 0.9323 -3.1478 10 8 2.2148 0.7077 -4.4908 11 6 1.9290 1.9046 -5.2172 12 6 1.4825 1.5510 -6.6124 13 1 1.4234 0.5158 -6.9143 14 6 1.1505 2.5491 -7.5037 15 7 1.2230 3.8098 -7.1362 16 14 0.5978 2.1109 -9.2335 17 1 -0.8775 1.9435 -9.2542 18 1 0.9858 3.1982 -10.1676 19 1 1.2459 0.8425 -9.6537 20 1 5.4722 0.2241 1.3256 21 1 5.5461 -0.2072 -1.2650 22 1 3.7028 -0.9419 -3.0183 23 1 2.0132 -1.0086 -2.4624 24 1 1.8704 1.4631 -2.5991 25 1 3.5600 1.5299 -3.1551 26 1 1.1365 2.4561 -4.7113 27 1 2.8259 2.5219 -5.2678 28 1 0.9890 4.5120 -7.7632 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385250181.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:33 Heat of formation + Delta-G solvation = 26.000394 kcal Electronic energy + Delta-G solvation = -13835.790195 eV Core-core repulsion = 11273.742542 eV Total energy + Delta-G solvation = -2562.047653 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.29260 -38.90924 -37.81667 -35.76621 -34.83635 -31.25403 -30.68080 -28.90333 -25.13375 -24.50958 -23.80514 -22.47211 -19.60229 -18.71490 -17.77424 -17.04438 -16.92095 -16.83710 -16.19695 -15.57701 -15.26410 -14.79867 -14.45875 -14.33371 -14.17863 -13.99727 -13.89844 -12.97728 -12.96828 -12.74307 -12.55861 -12.12911 -11.39688 -11.30026 -10.97730 -10.97610 -10.41002 -9.57803 -8.37170 -6.50493 0.14623 0.93572 1.39384 1.41757 1.52503 1.55698 1.64362 2.29280 2.35994 2.43736 2.97566 3.13790 3.55214 3.82171 3.94524 4.16311 4.23265 4.46913 4.54794 4.58895 4.76797 5.05308 5.09642 5.48626 5.58525 5.72100 5.86561 6.11572 6.36535 6.69737 6.74833 7.21390 8.75022 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047524 B = 0.005108 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.034391 B = 5480.736830 C = 5740.908697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.309 3.691 3 C 0.214 3.786 4 N -0.453 5.453 5 C -0.029 4.029 6 C 0.016 3.984 7 N -0.419 5.419 8 C 0.112 3.888 9 C 0.045 3.955 10 O -0.400 6.400 11 C 0.211 3.789 12 C -0.552 4.552 13 H 0.067 0.933 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.984 3.016 17 H -0.271 1.271 18 H -0.274 1.274 19 H -0.260 1.260 20 H 0.219 0.781 21 H 0.235 0.765 22 H 0.147 0.853 23 H 0.099 0.901 24 H 0.027 0.973 25 H 0.062 0.938 26 H -0.018 1.018 27 H -0.004 1.004 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -8.308 10.375 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.008 4.008 3 C -0.042 4.042 4 N -0.174 5.174 5 C -0.181 4.181 6 C -0.122 4.122 7 N -0.103 5.103 8 C -0.010 4.010 9 C -0.033 4.033 10 O -0.319 6.319 11 C 0.136 3.864 12 C -0.589 4.589 13 H 0.086 0.914 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.807 3.193 17 H -0.196 1.196 18 H -0.199 1.199 19 H -0.184 1.184 20 H 0.235 0.765 21 H 0.251 0.749 22 H 0.165 0.835 23 H 0.117 0.883 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.000 1.000 27 H 0.014 0.986 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.126 -8.200 10.860 15.849 hybrid contribution 0.114 0.504 -1.294 1.393 sum 8.239 -7.695 9.566 14.786 Atomic orbital electron populations 1.81318 1.11679 1.10019 1.06292 1.23613 0.90108 0.93139 0.93983 1.17075 0.85547 1.16615 0.84941 1.70284 1.04252 1.15886 1.26996 1.23154 0.93727 1.06917 0.94302 1.23994 0.86708 1.03982 0.97527 1.45490 1.07215 1.50109 1.07488 1.21826 1.04841 0.96690 0.77628 1.22659 0.98963 0.97076 0.84574 1.87740 1.87339 1.33618 1.23182 1.19891 0.93370 0.82318 0.90833 1.21385 1.46530 0.94334 0.96663 0.91431 1.25979 0.94841 0.94343 1.04053 1.70063 1.48548 1.00312 1.37984 0.85163 0.78712 0.78493 0.76959 1.19636 1.19939 1.18393 0.76494 0.74898 0.83549 0.88314 0.95510 0.91939 1.00049 0.98627 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -14.04 18.54 19.00 0.35 -13.69 15 2 C 0.31 9.34 15.42 88.33 1.36 10.70 15 3 C 0.21 5.54 7.66 135.09 1.03 6.57 15 4 N -0.45 -11.12 11.27 -193.29 -2.18 -13.30 15 5 C -0.03 -0.45 11.84 83.81 0.99 0.54 15 6 C 0.02 0.21 11.57 83.35 0.96 1.18 15 7 N -0.42 -8.71 2.78 -520.39 -1.45 -10.16 15 8 C 0.11 2.52 6.27 86.38 0.54 3.07 15 9 C 0.05 1.49 6.26 71.98 0.45 1.94 15 10 O -0.40 -17.85 10.33 -148.98 -1.54 -19.38 15 11 C 0.21 11.38 5.69 71.23 0.41 11.79 15 12 C -0.55 -31.75 9.43 25.60 0.24 -31.51 15 13 H 0.07 3.80 7.81 -2.91 -0.02 3.77 15 14 C 0.01 0.38 5.46 84.65 0.46 0.84 15 15 N -0.93 -54.95 13.29 21.45 0.28 -54.67 15 16 Si 0.98 43.18 29.54 68.60 2.03 45.21 15 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 15 20 H 0.22 1.71 8.06 -2.91 -0.02 1.68 15 21 H 0.23 1.00 8.06 -2.91 -0.02 0.98 15 22 H 0.15 2.39 8.13 -2.39 -0.02 2.37 15 23 H 0.10 2.34 7.95 -2.39 -0.02 2.32 15 24 H 0.03 0.96 8.14 -2.39 -0.02 0.94 15 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 26 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 15 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 15 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 Total: -1.00 -71.10 267.55 5.12 -65.98 By element: Atomic # 1 Polarization: -6.27 SS G_CDS: 1.16 Total: -5.11 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.45 Total: 5.12 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -2.99 Total: -91.82 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.54 Total: -19.38 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -71.10 5.12 -65.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385250181.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.979 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds