Wall clock time and date at job start Mon Mar 30 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.41275 * 126.39904 * 182.76622 * 3 2 1 5 5 N 1.30487 * 108.04838 * 179.76350 * 4 3 2 6 6 N 1.39935 * 108.89258 * 0.40948 * 5 4 3 7 7 C 1.46506 * 125.77354 * 179.84884 * 6 5 4 8 8 C 1.52999 * 109.46684 * 304.69367 * 7 6 5 9 9 O 1.42905 * 109.46728 * 179.97438 * 8 7 6 10 10 C 1.42899 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46785 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00689 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99662 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99656 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47213 * 89.99792 * 15 13 11 17 17 H 1.48503 * 109.46756 * 209.99957 * 15 13 11 18 18 H 1.48499 * 109.47025 * 329.99577 * 15 13 11 19 19 C 1.34430 * 108.45900 * 359.58224 * 6 5 4 20 20 H 1.07998 * 125.97519 * 0.02562 * 4 3 2 21 21 H 1.09000 * 109.47212 * 184.69134 * 7 6 5 22 22 H 1.09001 * 109.46577 * 64.69060 * 7 6 5 23 23 H 1.09000 * 109.47486 * 59.99935 * 8 7 6 24 24 H 1.09001 * 109.47362 * 299.99212 * 8 7 6 25 25 H 1.08997 * 109.47171 * 299.99768 * 10 9 8 26 26 H 1.08997 * 109.47442 * 59.99964 * 10 9 8 27 27 H 0.97001 * 120.00525 * 179.97438 * 14 13 11 28 28 H 1.08002 * 126.29645 * 180.20159 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4058 1.1368 0.0549 5 7 4.6445 0.7268 0.0402 6 7 4.6584 -0.6706 -0.0333 7 6 5.8555 -1.5142 -0.0743 8 6 6.7489 -1.0755 -1.2363 9 8 7.9169 -1.8980 -1.2758 10 6 8.8230 -1.5704 -2.3311 11 6 10.0118 -2.4950 -2.2776 12 1 10.0699 -3.2563 -1.5139 13 6 11.0260 -2.3681 -3.2031 14 7 10.9556 -1.4407 -4.1328 15 14 12.4993 -3.5147 -3.1371 16 1 12.2289 -4.7163 -3.9667 17 1 13.6978 -2.8112 -3.6606 18 1 12.7424 -3.9280 -1.7316 19 6 3.3876 -1.1084 -0.0542 20 1 3.0784 2.1647 0.1049 21 1 5.5622 -2.5546 -0.2141 22 1 6.4029 -1.4137 0.8630 23 1 7.0423 -0.0351 -1.0965 24 1 6.2016 -1.1760 -2.1735 25 1 8.3185 -1.6818 -3.2909 26 1 9.1590 -0.5400 -2.2147 27 1 11.6693 -1.3512 -4.7837 28 1 3.0670 -2.1385 -0.1047 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385269461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:09 Heat of formation + Delta-G solvation = 32.182255 kcal Electronic energy + Delta-G solvation = -13502.827966 eV Core-core repulsion = 10941.048379 eV Total energy + Delta-G solvation = -2561.779587 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.33623 -38.78456 -37.45426 -35.25361 -34.51705 -31.61531 -30.50995 -28.80112 -24.87353 -24.26500 -23.57818 -21.76260 -19.51303 -18.63182 -17.74590 -17.18165 -16.75464 -16.33280 -15.99783 -15.40464 -15.02954 -14.71060 -14.45266 -14.18691 -13.98037 -13.75663 -13.27618 -12.93541 -12.88193 -12.56859 -12.49180 -12.06634 -11.70671 -11.32733 -10.90735 -10.65850 -10.32738 -9.68644 -8.32740 -6.45756 0.51785 1.19050 1.25702 1.43034 1.45149 1.57393 1.73460 2.35272 2.62596 3.00516 3.01876 3.16851 3.78304 3.87554 4.03254 4.06744 4.27396 4.40126 4.67045 4.68937 4.76152 4.86910 5.13553 5.41107 5.53711 5.78684 5.92117 6.43797 6.54839 6.65939 6.75757 7.25999 8.79387 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.086052 B = 0.004025 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.305520 B = 6954.211320 C = 7034.838604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.324 3.676 3 C -0.212 4.212 4 C 0.106 3.894 5 N -0.328 5.328 6 N -0.356 5.356 7 C 0.143 3.857 8 C 0.049 3.951 9 O -0.400 6.400 10 C 0.211 3.789 11 C -0.549 4.549 12 H 0.068 0.932 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.985 3.015 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 C 0.149 3.851 20 H 0.219 0.781 21 H 0.143 0.857 22 H 0.106 0.894 23 H 0.040 0.960 24 H 0.043 0.957 25 H -0.011 1.011 26 H -0.014 1.014 27 H 0.271 0.729 28 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.110 0.027 8.174 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C 0.009 3.991 3 C -0.228 4.228 4 C -0.084 4.084 5 N -0.147 5.147 6 N -0.134 5.134 7 C 0.023 3.977 8 C -0.029 4.029 9 O -0.319 6.319 10 C 0.136 3.864 11 C -0.586 4.586 12 H 0.087 0.913 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.808 3.192 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.005 4.005 20 H 0.235 0.765 21 H 0.161 0.839 22 H 0.124 0.876 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.007 0.993 26 H 0.004 0.996 27 H 0.080 0.920 28 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.302 0.224 8.174 14.772 hybrid contribution 0.279 -0.042 -0.581 0.646 sum -12.024 0.182 7.593 14.222 Atomic orbital electron populations 1.81307 1.12926 1.08590 1.13496 1.24498 0.91102 0.92437 0.91018 1.16132 0.85282 0.94366 1.27027 1.24527 0.88037 1.00668 0.95145 1.77365 1.22024 0.89769 1.25552 1.48497 1.06233 1.05048 1.53597 1.21655 0.82449 0.93957 0.99628 1.22526 0.87582 0.94694 0.98061 1.87717 1.31981 1.58042 1.54199 1.19864 0.87436 0.94760 0.84339 1.21396 1.04272 1.17763 1.15198 0.91331 1.25996 1.01746 0.97498 0.94152 1.70071 1.35133 1.34489 1.17342 0.85145 0.76931 0.78062 0.79059 1.19270 1.20286 1.18586 1.23633 0.82438 1.01306 0.93163 0.76457 0.83891 0.87612 0.94116 0.93827 0.99305 0.99646 0.92046 0.75300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.15 18.54 19.00 0.35 -11.80 15 2 C 0.32 6.44 15.82 88.33 1.40 7.84 15 3 C -0.21 -3.57 5.96 -21.34 -0.13 -3.70 15 4 C 0.11 1.88 12.00 85.64 1.03 2.91 15 5 N -0.33 -7.76 12.34 -56.27 -0.69 -8.46 15 6 N -0.36 -7.18 3.65 -346.18 -1.26 -8.45 15 7 C 0.14 3.08 6.86 86.38 0.59 3.67 15 8 C 0.05 1.63 6.12 71.98 0.44 2.07 15 9 O -0.40 -17.65 10.33 -148.98 -1.54 -19.19 15 10 C 0.21 11.34 5.69 71.24 0.41 11.74 15 11 C -0.55 -31.27 9.43 25.60 0.24 -31.03 15 12 H 0.07 3.80 7.81 -2.91 -0.02 3.77 15 13 C 0.00 0.26 5.46 84.66 0.46 0.73 15 14 N -0.93 -54.80 13.29 21.45 0.28 -54.52 15 15 Si 0.99 42.76 29.54 68.60 2.03 44.79 15 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 17 H -0.28 -11.66 7.11 99.48 0.71 -10.96 15 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 19 C 0.15 2.12 11.44 84.24 0.96 3.09 15 20 H 0.22 2.47 8.06 -2.91 -0.02 2.45 15 21 H 0.14 2.14 8.06 -2.39 -0.02 2.12 15 22 H 0.11 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 15 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 15 26 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 28 H 0.23 1.23 8.06 -2.91 -0.02 1.21 15 Total: -1.00 -70.41 268.79 5.73 -64.68 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: 1.16 Total: -4.37 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.40 Total: -2.67 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.32 Total: -83.22 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.54 Total: -19.19 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.41 5.73 -64.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385269461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.858 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds