Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99824 * 2 1 4 4 O 1.20822 * 120.00099 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99870 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47335 * 60.00028 * 5 3 2 7 7 C 1.50704 * 109.47172 * 299.99965 * 5 3 2 8 8 H 1.08003 * 120.00069 * 304.91875 * 7 5 3 9 9 C 1.37872 * 120.00035 * 124.92228 * 7 5 3 10 10 N 1.31512 * 119.99983 * 184.74051 * 9 7 5 11 11 Si 1.86800 * 119.99837 * 4.73598 * 9 7 5 12 12 H 1.48496 * 109.47179 * 84.63137 * 11 9 7 13 13 H 1.48501 * 109.46905 * 204.62744 * 11 9 7 14 14 H 1.48497 * 109.47345 * 324.62902 * 11 9 7 15 15 C 1.50702 * 109.46950 * 180.02562 * 5 3 2 16 16 C 1.38228 * 119.61964 * 38.71252 * 15 5 3 17 17 C 1.38627 * 119.16113 * 179.97438 * 16 15 5 18 18 C 1.38671 * 118.42136 * 0.02562 * 17 16 15 19 19 C 1.38179 * 119.16368 * 0.02562 * 18 17 16 20 20 N 1.31847 * 119.61546 * 218.44562 * 15 5 3 21 21 H 1.09007 * 109.46777 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47656 * 300.00265 * 1 2 3 23 23 H 1.09001 * 109.46849 * 60.00445 * 1 2 3 24 24 H 0.97000 * 120.00198 * 180.02562 * 10 9 7 25 25 H 1.08006 * 120.41841 * 0.02562 * 16 15 5 26 26 H 1.08002 * 120.78633 * 180.02562 * 17 16 15 27 27 H 1.08005 * 120.42037 * 180.02562 * 18 17 16 28 28 H 1.08003 * 119.62138 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8891 7 6 4.1047 0.5920 1.2314 8 1 3.7632 0.8952 2.2102 9 6 5.0332 -0.4197 1.1081 10 7 5.4334 -1.0784 2.1736 11 14 5.7227 -0.8547 -0.5726 12 1 6.8605 0.0455 -0.8890 13 1 6.1931 -2.2632 -0.5652 14 1 4.6626 -0.6923 -1.5998 15 6 3.9936 2.7201 0.0011 16 6 3.2878 3.6409 0.7526 17 6 3.6894 4.9677 0.7465 18 6 4.7905 5.3205 -0.0190 19 6 5.4459 4.3449 -0.7456 20 7 5.0394 3.0906 -0.7111 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 6.0869 -1.7900 2.0869 25 1 2.4347 3.3304 1.3377 26 1 3.1573 5.7090 1.3243 27 1 5.1316 6.3449 -0.0469 28 1 6.3041 4.6116 -1.3447 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396933856.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = -47.515960 kcal Electronic energy + Delta-G solvation = -14885.616307 eV Core-core repulsion = 12288.087995 eV Total energy + Delta-G solvation = -2597.528312 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07337 -38.99400 -35.76007 -33.78175 -31.88351 -31.44516 -28.81316 -26.90496 -23.88325 -22.84954 -22.01990 -19.79337 -17.40411 -16.86209 -16.31858 -15.88774 -15.38107 -15.08584 -14.74943 -13.96728 -13.25173 -13.09386 -12.69345 -12.54917 -12.46022 -12.09654 -11.74160 -11.39377 -10.93860 -10.49043 -10.07255 -9.96986 -9.79992 -9.52989 -9.10761 -8.80098 -8.66820 -8.14097 -6.31948 -4.38746 1.83550 1.98389 3.06830 3.30426 3.32221 3.39109 3.54975 4.28133 4.53343 4.96175 5.15063 5.36115 5.53154 5.55278 5.60817 5.68659 5.80311 5.87838 6.07936 6.25074 6.36327 6.50926 6.80129 6.89295 7.12840 7.18362 7.44011 8.14902 8.55295 8.72920 8.75862 9.24877 10.78046 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.014739 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.486534 B = 1899.304754 C = 2831.636945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.341 6.341 3 C 0.476 3.524 4 O -0.539 6.539 5 C 0.056 3.944 6 H 0.098 0.902 7 C -0.509 4.509 8 H 0.083 0.917 9 C 0.091 3.909 10 N -0.875 5.875 11 Si 0.881 3.119 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.172 3.828 16 C -0.137 4.137 17 C -0.088 4.088 18 C -0.198 4.198 19 C 0.090 3.910 20 N -0.488 5.488 21 H 0.093 0.907 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.272 0.728 25 H 0.137 0.863 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 6.010 -4.801 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.256 6.256 3 C 0.322 3.678 4 O -0.430 6.430 5 C 0.036 3.964 6 H 0.115 0.885 7 C -0.546 4.546 8 H 0.101 0.899 9 C -0.116 4.116 10 N -0.509 5.509 11 Si 0.708 3.292 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.034 3.966 16 C -0.157 4.157 17 C -0.114 4.114 18 C -0.218 4.218 19 C -0.067 4.067 20 N -0.197 5.197 21 H 0.111 0.889 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.155 0.845 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.897 5.495 -5.188 8.503 hybrid contribution -0.237 0.524 -0.118 0.587 sum -4.134 6.019 -5.306 9.026 Atomic orbital electron populations 1.23124 0.78631 1.02740 1.01607 1.86632 1.21337 1.33853 1.83804 1.24795 0.93013 0.80357 0.69634 1.90523 1.67976 1.36332 1.48139 1.18000 0.85220 0.90509 1.02711 0.88478 1.20367 1.25706 1.17838 0.90645 0.89852 1.25039 0.94912 0.94311 0.97337 1.69860 1.30296 1.21446 1.29345 0.86757 0.80521 0.77803 0.84149 1.18760 1.21073 1.18576 1.21188 0.89805 0.95484 0.90106 1.22084 1.00432 0.93174 1.00026 1.21463 0.95897 0.96386 0.97617 1.21884 0.98545 1.00421 1.00943 1.22534 0.98618 0.88354 0.97231 1.67343 1.13674 1.18592 1.20114 0.88891 0.92484 0.92838 0.91829 0.84536 0.85869 0.85946 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 101.05 1.07 1.59 15 2 O -0.34 -7.30 10.48 -39.27 -0.41 -7.71 15 3 C 0.48 10.97 7.00 36.01 0.25 11.22 15 4 O -0.54 -12.27 13.15 -18.75 -0.25 -12.52 15 5 C 0.06 1.37 2.45 -94.07 -0.23 1.14 15 6 H 0.10 2.41 4.48 -51.93 -0.23 2.18 15 7 C -0.51 -13.98 8.76 -34.44 -0.30 -14.28 15 8 H 0.08 2.47 8.06 -52.48 -0.42 2.05 15 9 C 0.09 2.52 5.47 -17.82 -0.10 2.43 15 10 N -0.88 -25.51 13.96 55.43 0.77 -24.73 15 11 Si 0.88 21.26 27.38 -169.99 -4.65 16.61 15 12 H -0.26 -6.35 7.11 56.52 0.40 -5.95 15 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 14 H -0.26 -6.03 6.21 56.52 0.35 -5.68 15 15 C 0.17 4.00 5.60 -82.59 -0.46 3.54 15 16 C -0.14 -2.90 8.24 -39.44 -0.32 -3.23 15 17 C -0.09 -1.54 10.18 -39.28 -0.40 -1.94 15 18 C -0.20 -3.20 10.11 -39.44 -0.40 -3.60 15 19 C 0.09 1.62 11.18 -17.55 -0.20 1.42 15 20 N -0.49 -10.88 10.27 -9.47 -0.10 -10.98 15 21 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.06 0.87 8.13 -51.93 -0.42 0.45 15 23 H 0.05 0.78 8.13 -51.93 -0.42 0.35 15 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.14 2.94 6.28 -52.48 -0.33 2.61 15 26 H 0.12 1.74 8.06 -52.49 -0.42 1.32 15 27 H 0.12 1.52 8.06 -52.48 -0.42 1.10 15 28 H 0.15 2.10 8.06 -52.48 -0.42 1.67 15 LS Contribution 250.92 15.07 3.78 3.78 Total: -1.00 -31.02 250.92 -4.66 -35.67 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.71 Total: 1.58 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.09 Total: -1.70 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.68 Total: -35.71 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.66 Total: -20.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.65 Total: 16.61 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.02 -4.66 -35.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396933856.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.843 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds