Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99824 * 2 1 4 4 O 1.20822 * 120.00099 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99870 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47335 * 60.00028 * 5 3 2 7 7 C 1.50704 * 109.47172 * 299.99965 * 5 3 2 8 8 H 1.08003 * 120.00069 * 304.91875 * 7 5 3 9 9 C 1.37872 * 120.00035 * 124.92228 * 7 5 3 10 10 N 1.31512 * 119.99983 * 184.74051 * 9 7 5 11 11 Si 1.86800 * 119.99837 * 4.73598 * 9 7 5 12 12 H 1.48496 * 109.47179 * 84.63137 * 11 9 7 13 13 H 1.48501 * 109.46905 * 204.62744 * 11 9 7 14 14 H 1.48497 * 109.47345 * 324.62902 * 11 9 7 15 15 C 1.50702 * 109.46950 * 180.02562 * 5 3 2 16 16 C 1.38228 * 119.61964 * 38.71252 * 15 5 3 17 17 C 1.38627 * 119.16113 * 179.97438 * 16 15 5 18 18 C 1.38671 * 118.42136 * 0.02562 * 17 16 15 19 19 C 1.38179 * 119.16368 * 0.02562 * 18 17 16 20 20 N 1.31847 * 119.61546 * 218.44562 * 15 5 3 21 21 H 1.09007 * 109.46777 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47656 * 300.00265 * 1 2 3 23 23 H 1.09001 * 109.46849 * 60.00445 * 1 2 3 24 24 H 0.97000 * 120.00198 * 180.02562 * 10 9 7 25 25 H 1.08006 * 120.41841 * 0.02562 * 16 15 5 26 26 H 1.08002 * 120.78633 * 180.02562 * 17 16 15 27 27 H 1.08005 * 120.42037 * 180.02562 * 18 17 16 28 28 H 1.08003 * 119.62138 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8891 7 6 4.1047 0.5920 1.2314 8 1 3.7632 0.8952 2.2102 9 6 5.0332 -0.4197 1.1081 10 7 5.4334 -1.0784 2.1736 11 14 5.7227 -0.8547 -0.5726 12 1 6.8605 0.0455 -0.8890 13 1 6.1931 -2.2632 -0.5652 14 1 4.6626 -0.6923 -1.5998 15 6 3.9936 2.7201 0.0011 16 6 3.2878 3.6409 0.7526 17 6 3.6894 4.9677 0.7465 18 6 4.7905 5.3205 -0.0190 19 6 5.4459 4.3449 -0.7456 20 7 5.0394 3.0906 -0.7111 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 6.0869 -1.7900 2.0869 25 1 2.4347 3.3304 1.3377 26 1 3.1573 5.7090 1.3243 27 1 5.1316 6.3449 -0.0469 28 1 6.3041 4.6116 -1.3447 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396933856.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -68.241195 kcal Electronic energy + Delta-G solvation = -14886.515021 eV Core-core repulsion = 12288.087995 eV Total energy + Delta-G solvation = -2598.427026 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73728 -40.55473 -37.43265 -35.70403 -33.62080 -33.07431 -30.43288 -28.35843 -25.81116 -24.32042 -23.58391 -21.49882 -19.45527 -18.60519 -17.83051 -17.46525 -17.08868 -16.64267 -16.36198 -15.66535 -14.86112 -14.81975 -14.44134 -14.13825 -13.92778 -13.73661 -13.36273 -12.83487 -12.79519 -12.20678 -11.87624 -11.77454 -11.62582 -11.35408 -10.83184 -10.61242 -10.23586 -9.68499 -8.43847 -6.54686 0.35786 0.53219 1.24057 1.37773 1.42097 1.47281 1.96639 2.28093 2.86282 3.10696 3.66967 4.00470 4.11489 4.24135 4.29496 4.36352 4.36893 4.40093 4.60142 4.69673 4.83146 5.00747 5.18346 5.33431 5.41694 5.48627 5.93887 6.04335 6.45604 6.90159 7.12146 7.23414 8.70415 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.014739 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.486534 B = 1899.304754 C = 2831.636945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.477 3.523 4 O -0.540 6.540 5 C 0.054 3.946 6 H 0.092 0.908 7 C -0.510 4.510 8 H 0.043 0.957 9 C 0.042 3.958 10 N -0.921 5.921 11 Si 0.936 3.064 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.248 1.248 15 C 0.138 3.862 16 C -0.160 4.160 17 C -0.084 4.084 18 C -0.176 4.176 19 C 0.080 3.920 20 N -0.520 5.520 21 H 0.129 0.871 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.276 0.724 25 H 0.120 0.880 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 7.824 -6.288 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.322 3.678 4 O -0.431 6.431 5 C 0.034 3.966 6 H 0.109 0.891 7 C -0.547 4.547 8 H 0.061 0.939 9 C -0.160 4.160 10 N -0.557 5.557 11 Si 0.760 3.240 12 H -0.187 1.187 13 H -0.199 1.199 14 H -0.172 1.172 15 C 0.001 3.999 16 C -0.180 4.180 17 C -0.110 4.110 18 C -0.196 4.196 19 C -0.077 4.077 20 N -0.230 5.230 21 H 0.147 0.853 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.138 0.862 26 H 0.178 0.822 27 H 0.191 0.809 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.849 7.306 -6.678 10.620 hybrid contribution -0.341 0.122 0.371 0.519 sum -4.190 7.428 -6.306 10.607 Atomic orbital electron populations 1.23544 0.75420 1.05452 1.02380 1.86580 1.24573 1.32993 1.83408 1.24364 0.92628 0.80896 0.69882 1.90498 1.67934 1.36446 1.48230 1.17910 0.86182 0.91812 1.00696 0.89088 1.20341 1.25736 1.18269 0.90378 0.93853 1.25785 0.95209 0.94206 1.00782 1.69963 1.31686 1.22642 1.31444 0.85889 0.80024 0.77948 0.80185 1.18681 1.19868 1.17241 1.20960 0.91429 0.95063 0.92452 1.22060 1.00565 0.94980 1.00432 1.21919 0.96277 0.95306 0.97450 1.22417 0.96643 1.02353 0.98151 1.23285 0.99545 0.87357 0.97505 1.67282 1.13693 1.21131 1.20848 0.85317 0.92311 0.91476 0.91494 0.86171 0.82210 0.80880 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 15 2 O -0.36 -15.47 10.48 -51.46 -0.54 -16.01 15 3 C 0.48 22.34 7.00 71.24 0.50 22.84 15 4 O -0.54 -24.78 13.15 21.98 0.29 -24.49 15 5 C 0.05 2.73 2.45 -13.03 -0.03 2.69 15 6 H 0.09 4.57 4.48 -2.39 -0.01 4.56 15 7 C -0.51 -29.22 8.76 25.60 0.22 -29.00 15 8 H 0.04 2.74 8.06 -2.91 -0.02 2.72 15 9 C 0.04 2.42 5.47 84.65 0.46 2.88 15 10 N -0.92 -55.51 13.96 21.44 0.30 -55.21 15 11 Si 0.94 44.28 27.38 68.60 1.88 46.16 15 12 H -0.26 -12.27 7.11 99.48 0.71 -11.56 15 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 14 H -0.25 -11.09 6.21 99.48 0.62 -10.47 15 15 C 0.14 6.44 5.60 42.55 0.24 6.68 15 16 C -0.16 -6.75 8.24 22.36 0.18 -6.57 15 17 C -0.08 -2.69 10.18 22.47 0.23 -2.46 15 18 C -0.18 -4.92 10.11 22.36 0.23 -4.69 15 19 C 0.08 2.64 11.18 84.67 0.95 3.58 15 20 N -0.52 -22.62 10.27 -183.88 -1.89 -24.51 15 21 H 0.13 2.92 8.14 -2.38 -0.02 2.90 15 22 H 0.06 1.75 8.13 -2.39 -0.02 1.73 15 23 H 0.07 1.84 8.13 -2.39 -0.02 1.82 15 24 H 0.28 15.38 8.31 -92.71 -0.77 14.61 15 25 H 0.12 5.32 6.28 -2.91 -0.02 5.30 15 26 H 0.16 3.86 8.06 -2.91 -0.02 3.84 15 27 H 0.17 3.11 8.06 -2.91 -0.02 3.08 15 28 H 0.18 4.46 8.06 -2.91 -0.02 4.43 15 Total: -1.00 -70.03 250.92 5.29 -64.74 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.08 Total: 11.40 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.17 Total: -2.08 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -1.59 Total: -79.72 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.25 Total: -40.50 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -70.03 5.29 -64.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396933856.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.503 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds