Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34228 * 116.99391 * 2 1 4 4 O 1.20830 * 120.00466 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99581 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47494 * 299.99791 * 5 3 2 7 7 C 1.50705 * 109.47231 * 59.99984 * 5 3 2 8 8 H 1.08001 * 119.99981 * 120.00156 * 7 5 3 9 9 C 1.37875 * 120.00046 * 299.99584 * 7 5 3 10 10 N 1.31517 * 119.99718 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 119.99965 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47371 * 60.00278 * 11 9 7 13 13 H 1.48509 * 109.46861 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47325 * 300.00071 * 11 9 7 15 15 C 1.50707 * 109.47048 * 179.97438 * 5 3 2 16 16 C 1.38223 * 119.61967 * 325.00455 * 15 5 3 17 17 C 1.38625 * 119.15978 * 180.27814 * 16 15 5 18 18 C 1.38677 * 118.42126 * 359.46985 * 17 16 15 19 19 C 1.38182 * 119.16110 * 0.48634 * 18 17 16 20 20 N 1.31856 * 119.61465 * 144.97527 * 15 5 3 21 21 H 1.08996 * 109.47049 * 60.00663 * 1 2 3 22 22 H 1.08999 * 109.46606 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47018 * 300.00205 * 1 2 3 24 24 H 0.97000 * 120.00076 * 179.97438 * 10 9 7 25 25 H 1.08002 * 120.41617 * 359.97438 * 16 15 5 26 26 H 1.08003 * 120.79223 * 179.72202 * 17 16 15 27 27 H 1.08006 * 120.41702 * 180.22168 * 18 17 16 28 28 H 1.07998 * 119.61686 * 179.76233 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1056 0.5916 -1.2296 8 1 4.6985 1.1481 -1.9403 9 6 3.8423 -0.7441 -1.4475 10 7 3.1200 -1.4217 -0.5822 11 14 4.5115 -1.5913 -2.9719 12 1 5.9944 -1.5137 -2.9708 13 1 4.0899 -3.0153 -2.9721 14 1 3.9815 -0.9186 -4.1851 15 6 3.9935 2.7202 -0.0002 16 6 3.2435 3.6539 -0.6902 17 6 3.6484 4.9797 -0.6894 18 6 4.7916 5.3202 0.0180 19 6 5.4898 4.3320 0.6852 20 7 5.0781 3.0794 0.6580 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 2.9344 -2.3613 -0.7357 25 1 2.3559 3.3535 -1.2274 26 1 3.0847 5.7304 -1.2234 27 1 5.1342 6.3442 0.0434 28 1 6.3833 4.5883 1.2352 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396933858.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -35.762682 kcal Electronic energy + Delta-G solvation = -15000.265832 eV Core-core repulsion = 12403.247180 eV Total energy + Delta-G solvation = -2597.018652 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.80213 -38.65132 -35.16062 -33.72802 -31.80931 -31.16939 -28.28060 -26.41938 -24.04219 -22.77449 -21.76450 -19.61429 -16.94410 -16.23966 -16.16082 -15.70457 -14.98005 -14.76076 -14.47566 -14.08427 -13.23916 -12.85368 -12.50114 -12.29924 -12.06704 -11.62914 -11.36447 -10.96933 -10.89200 -10.63468 -10.11265 -9.75175 -9.44253 -9.34951 -8.99204 -8.65756 -8.42180 -8.09424 -6.16084 -4.31972 1.86729 2.01942 3.25819 3.29468 3.32422 3.63936 4.10863 4.29777 4.63994 5.10996 5.23098 5.39136 5.54954 5.73871 5.94262 5.98054 6.01049 6.17848 6.31978 6.47941 6.57658 6.75095 6.92688 7.23543 7.42750 7.67137 7.74893 7.93515 8.63661 8.80131 9.25505 9.32259 10.83366 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.011839 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.793010 B = 2364.430015 C = 3079.582511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.472 3.528 4 O -0.568 6.568 5 C 0.095 3.905 6 H 0.081 0.919 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.065 3.935 10 N -0.829 5.829 11 Si 0.903 3.097 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.276 1.276 15 C 0.169 3.831 16 C -0.136 4.136 17 C -0.094 4.094 18 C -0.197 4.197 19 C 0.083 3.917 20 N -0.481 5.481 21 H 0.043 0.957 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.268 0.732 25 H 0.146 0.854 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 5.559 0.155 5.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.319 3.681 4 O -0.463 6.463 5 C 0.075 3.925 6 H 0.099 0.901 7 C -0.556 4.556 8 H 0.086 0.914 9 C -0.143 4.143 10 N -0.464 5.464 11 Si 0.730 3.270 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.201 1.201 15 C 0.031 3.969 16 C -0.156 4.156 17 C -0.120 4.120 18 C -0.217 4.217 19 C -0.074 4.074 20 N -0.190 5.190 21 H 0.062 0.938 22 H 0.101 0.899 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.164 0.836 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.740 4.969 0.663 5.068 hybrid contribution -0.480 0.351 -1.295 1.426 sum -1.221 5.320 -0.632 5.495 Atomic orbital electron populations 1.23082 0.82867 1.01571 1.00199 1.87517 1.17621 1.30955 1.82001 1.25293 0.92975 0.80877 0.68949 1.90449 1.68293 1.37115 1.50414 1.17444 0.85435 0.87580 1.02025 0.90101 1.20626 1.34577 0.94608 1.05780 0.91440 1.25047 0.94727 0.97204 0.97301 1.69845 1.33109 1.08930 1.34482 0.86457 0.79634 0.78320 0.82576 1.19839 1.20906 1.20139 1.21198 0.89279 0.96282 0.90130 1.22401 1.00580 0.92925 0.99679 1.21519 0.95917 0.96642 0.97879 1.21920 0.97896 1.00304 1.01547 1.22555 0.98954 0.88437 0.97452 1.67419 1.14354 1.18856 1.18400 0.93826 0.89913 0.93963 0.92111 0.83630 0.85941 0.86043 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.56 101.05 1.07 1.43 15 2 O -0.27 -6.64 6.99 -39.25 -0.27 -6.92 15 3 C 0.47 11.97 7.00 36.00 0.25 12.22 15 4 O -0.57 -14.24 12.86 -18.75 -0.24 -14.48 15 5 C 0.10 2.45 2.57 -94.07 -0.24 2.21 15 6 H 0.08 2.20 8.14 -51.93 -0.42 1.78 15 7 C -0.52 -13.90 8.54 -34.44 -0.29 -14.20 15 8 H 0.07 1.82 7.74 -52.49 -0.41 1.41 15 9 C 0.06 1.69 5.23 -17.82 -0.09 1.60 15 10 N -0.83 -22.01 10.00 55.43 0.55 -21.46 15 11 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 15 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 15 C 0.17 3.99 5.62 -82.58 -0.46 3.53 15 16 C -0.14 -2.95 8.27 -39.44 -0.33 -3.27 15 17 C -0.09 -1.66 10.18 -39.28 -0.40 -2.06 15 18 C -0.20 -3.19 10.11 -39.44 -0.40 -3.59 15 19 C 0.08 1.49 11.18 -17.55 -0.20 1.30 15 20 N -0.48 -10.72 10.27 -9.47 -0.10 -10.82 15 21 H 0.04 0.82 8.13 -51.93 -0.42 0.40 15 22 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 23 H 0.04 0.77 8.13 -51.93 -0.42 0.35 15 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 25 H 0.15 3.30 5.95 -52.49 -0.31 2.99 15 26 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 27 H 0.12 1.51 8.06 -52.48 -0.42 1.09 15 28 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 248.97 15.07 3.75 3.75 Total: -1.00 -29.22 248.97 -5.24 -34.46 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.81 Total: 0.97 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.10 Total: -0.84 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.46 Total: -32.27 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.52 Total: -21.40 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.22 -5.24 -34.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396933858.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.306 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds