Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34228 * 116.99391 * 2 1 4 4 O 1.20830 * 120.00466 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99581 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47494 * 299.99791 * 5 3 2 7 7 C 1.50705 * 109.47231 * 59.99984 * 5 3 2 8 8 H 1.08001 * 119.99981 * 120.00156 * 7 5 3 9 9 C 1.37875 * 120.00046 * 299.99584 * 7 5 3 10 10 N 1.31517 * 119.99718 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 119.99965 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47371 * 60.00278 * 11 9 7 13 13 H 1.48509 * 109.46861 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47325 * 300.00071 * 11 9 7 15 15 C 1.50707 * 109.47048 * 179.97438 * 5 3 2 16 16 C 1.38223 * 119.61967 * 325.00455 * 15 5 3 17 17 C 1.38625 * 119.15978 * 180.27814 * 16 15 5 18 18 C 1.38677 * 118.42126 * 359.46985 * 17 16 15 19 19 C 1.38182 * 119.16110 * 0.48634 * 18 17 16 20 20 N 1.31856 * 119.61465 * 144.97527 * 15 5 3 21 21 H 1.08996 * 109.47049 * 60.00663 * 1 2 3 22 22 H 1.08999 * 109.46606 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47018 * 300.00205 * 1 2 3 24 24 H 0.97000 * 120.00076 * 179.97438 * 10 9 7 25 25 H 1.08002 * 120.41617 * 359.97438 * 16 15 5 26 26 H 1.08003 * 120.79223 * 179.72202 * 17 16 15 27 27 H 1.08006 * 120.41702 * 180.22168 * 18 17 16 28 28 H 1.07998 * 119.61686 * 179.76233 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1056 0.5916 -1.2296 8 1 4.6985 1.1481 -1.9403 9 6 3.8423 -0.7441 -1.4475 10 7 3.1200 -1.4217 -0.5822 11 14 4.5115 -1.5913 -2.9719 12 1 5.9944 -1.5137 -2.9708 13 1 4.0899 -3.0153 -2.9721 14 1 3.9815 -0.9186 -4.1851 15 6 3.9935 2.7202 -0.0002 16 6 3.2435 3.6539 -0.6902 17 6 3.6484 4.9797 -0.6894 18 6 4.7916 5.3202 0.0180 19 6 5.4898 4.3320 0.6852 20 7 5.0781 3.0794 0.6580 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 2.9344 -2.3613 -0.7357 25 1 2.3559 3.3535 -1.2274 26 1 3.0847 5.7304 -1.2234 27 1 5.1342 6.3442 0.0434 28 1 6.3833 4.5883 1.2352 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396933858.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -53.695926 kcal Electronic energy + Delta-G solvation = -15001.043476 eV Core-core repulsion = 12403.247180 eV Total energy + Delta-G solvation = -2597.796296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51347 -40.36925 -37.02419 -35.63951 -33.38878 -32.86438 -29.99433 -28.09855 -25.94825 -24.25809 -23.40643 -21.44545 -18.90189 -18.13047 -17.70857 -17.34971 -16.73897 -16.47588 -16.25867 -15.70929 -14.90630 -14.40451 -14.22672 -13.88142 -13.69278 -13.45053 -13.07538 -12.79066 -12.52227 -12.38005 -12.04852 -11.59646 -11.26908 -11.14872 -10.62495 -10.39259 -10.17413 -9.66104 -8.13353 -6.37538 0.37631 0.55160 1.45129 1.46434 1.53885 1.68854 2.36178 2.43066 3.09293 3.11271 3.74682 4.06241 4.13286 4.38083 4.43112 4.44703 4.47338 4.52598 4.74909 4.88741 4.99665 5.12820 5.39669 5.48700 5.65278 5.79880 5.88494 6.06965 6.59466 7.25575 7.29267 7.36063 8.85746 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.011839 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.793010 B = 2364.430015 C = 3079.582511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.292 6.292 3 C 0.470 3.530 4 O -0.571 6.571 5 C 0.094 3.906 6 H 0.049 0.951 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.025 3.975 10 N -0.848 5.848 11 Si 0.964 3.036 12 H -0.272 1.272 13 H -0.273 1.273 14 H -0.274 1.274 15 C 0.134 3.866 16 C -0.159 4.159 17 C -0.088 4.088 18 C -0.175 4.175 19 C 0.076 3.924 20 N -0.516 5.516 21 H 0.046 0.954 22 H 0.111 0.889 23 H 0.052 0.948 24 H 0.272 0.728 25 H 0.126 0.874 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 7.098 -0.407 7.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.203 6.203 3 C 0.317 3.683 4 O -0.466 6.466 5 C 0.074 3.926 6 H 0.066 0.934 7 C -0.578 4.578 8 H 0.074 0.926 9 C -0.180 4.180 10 N -0.483 5.483 11 Si 0.788 3.212 12 H -0.197 1.197 13 H -0.197 1.197 14 H -0.200 1.200 15 C -0.002 4.002 16 C -0.179 4.179 17 C -0.114 4.114 18 C -0.194 4.194 19 C -0.081 4.081 20 N -0.225 5.225 21 H 0.065 0.935 22 H 0.129 0.871 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.178 0.822 27 H 0.192 0.808 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.369 6.500 0.106 6.512 hybrid contribution -0.605 -0.022 -1.055 1.216 sum -0.974 6.478 -0.948 6.619 Atomic orbital electron populations 1.23364 0.80096 1.03725 1.00875 1.87429 1.20432 1.30657 1.81762 1.25130 0.93028 0.81085 0.69064 1.90418 1.68375 1.37173 1.50666 1.17283 0.85708 0.89433 1.00190 0.93367 1.20743 1.35346 0.95320 1.06394 0.92597 1.25759 0.94808 0.97515 0.99958 1.69971 1.33500 1.09174 1.35612 0.85524 0.78889 0.77637 0.79127 1.19709 1.19737 1.19964 1.20938 0.91013 0.95530 0.92714 1.22270 1.00366 0.94755 1.00487 1.21955 0.96506 0.95438 0.97453 1.22449 0.96093 1.02270 0.98633 1.23315 1.00054 0.87358 0.97350 1.67345 1.14378 1.21569 1.19253 0.93476 0.87083 0.92931 0.91842 0.85638 0.82229 0.80817 0.79948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.55 10.56 113.37 1.20 1.75 15 2 O -0.29 -14.66 6.99 -51.40 -0.36 -15.02 15 3 C 0.47 24.69 7.00 71.23 0.50 25.19 15 4 O -0.57 -29.39 12.86 21.95 0.28 -29.10 15 5 C 0.09 5.08 2.57 -13.03 -0.03 5.05 15 6 H 0.05 2.83 8.14 -2.39 -0.02 2.81 15 7 C -0.54 -30.13 8.54 25.60 0.22 -29.91 15 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 15 9 C 0.03 1.36 5.23 84.65 0.44 1.80 15 10 N -0.85 -45.93 10.00 21.45 0.21 -45.71 15 11 Si 0.96 42.11 29.54 68.60 2.03 44.14 15 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 13 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 15 C 0.13 6.54 5.62 42.55 0.24 6.78 15 16 C -0.16 -6.91 8.27 22.36 0.18 -6.73 15 17 C -0.09 -2.87 10.18 22.47 0.23 -2.65 15 18 C -0.18 -4.95 10.11 22.36 0.23 -4.72 15 19 C 0.08 2.55 11.18 84.67 0.95 3.50 15 20 N -0.52 -23.09 10.27 -183.88 -1.89 -24.98 15 21 H 0.05 1.76 8.13 -2.39 -0.02 1.74 15 22 H 0.11 3.58 8.14 -2.39 -0.02 3.57 15 23 H 0.05 1.89 8.13 -2.39 -0.02 1.87 15 24 H 0.27 13.78 8.31 -92.71 -0.77 13.01 15 25 H 0.13 5.85 5.95 -2.91 -0.02 5.84 15 26 H 0.16 3.96 8.06 -2.91 -0.02 3.94 15 27 H 0.17 3.14 8.06 -2.91 -0.02 3.12 15 28 H 0.18 4.51 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -65.49 248.97 5.59 -59.91 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.16 Total: 10.71 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 4.15 Total: 0.05 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.67 Total: -70.69 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.08 Total: -44.12 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -65.49 5.59 -59.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396933858.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.211 kcal (2) G-P(sol) polarization free energy of solvation -65.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds