Wall clock time and date at job start Mon Mar 30 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47480 * 111.00171 * 265.97194 * 11 10 9 13 13 C 1.53513 * 87.93170 * 221.29782 * 12 11 10 14 14 O 1.42904 * 114.16855 * 139.67012 * 13 12 11 15 15 C 1.42902 * 113.99828 * 116.15948 * 14 13 12 16 16 F 1.39902 * 109.46975 * 299.99865 * 15 14 13 17 17 F 1.39902 * 109.47152 * 60.00147 * 15 14 13 18 18 C 1.47482 * 110.99764 * 169.99993 * 11 10 9 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 1.08999 * 113.47664 * 336.06792 * 12 11 10 25 25 H 1.08994 * 113.47488 * 106.52987 * 12 11 10 26 26 H 1.08999 * 114.16922 * 272.37539 * 13 12 11 27 27 H 1.08997 * 109.46883 * 179.97438 * 15 14 13 28 28 H 1.08994 * 113.48196 * 253.46980 * 18 11 10 29 29 H 1.09003 * 113.47819 * 23.94188 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 1.3309 -5.4401 1.3756 13 6 1.6490 -6.8435 0.8409 14 8 2.4761 -7.6253 1.7051 15 6 1.8389 -8.7986 2.2146 16 9 0.7054 -8.4323 2.9482 17 9 1.4592 -9.6228 1.1498 18 6 2.4208 -6.0699 -0.2373 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 2.0749 -5.0640 2.0778 25 1 0.3110 -5.3374 1.7459 26 1 0.7808 -7.3856 0.4660 27 1 2.5322 -9.3368 2.8609 28 1 2.3245 -6.5011 -1.2337 29 1 3.4557 -5.8620 0.0345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399853297.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:32 Heat of formation + Delta-G solvation = -150.712972 kcal Electronic energy + Delta-G solvation = -14959.860475 eV Core-core repulsion = 11939.460769 eV Total energy + Delta-G solvation = -3020.399706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.00193 -48.12745 -41.29457 -37.92633 -35.48872 -32.83222 -28.98588 -27.05605 -26.62717 -25.13862 -22.41905 -21.32978 -19.53327 -18.64795 -18.63171 -18.48991 -16.67697 -16.61872 -16.41595 -16.10901 -15.02282 -14.71079 -14.62045 -14.51986 -14.29559 -13.92269 -13.76910 -13.48578 -13.14062 -12.87400 -12.81164 -12.56581 -12.25387 -11.63449 -11.44176 -11.22187 -11.11724 -10.58436 -9.95321 -8.21847 -6.34344 1.39681 1.40379 1.53795 1.98365 2.39445 2.72107 3.09608 3.11430 3.19193 3.67150 3.86148 3.92993 4.01080 4.13967 4.37903 4.46037 4.60326 4.69957 4.71720 5.00547 5.23843 5.41876 5.55137 5.68648 5.75727 6.03058 6.22919 6.83013 7.35350 8.90715 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.073164 B = 0.004880 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.611652 B = 5736.629158 C = 5837.999654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.039 3.961 10 C 0.047 3.953 11 N -0.490 5.490 12 C -0.014 4.014 13 C 0.061 3.939 14 O -0.378 6.378 15 C 0.398 3.602 16 F -0.221 7.221 17 F -0.218 7.218 18 C 0.006 3.994 19 H 0.264 0.736 20 H -0.009 1.009 21 H -0.013 1.013 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.218 0.782 28 H 0.106 0.894 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 -17.853 4.406 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.001 3.999 10 C -0.081 4.081 11 N -0.214 5.214 12 C -0.143 4.143 13 C 0.004 3.996 14 O -0.299 6.299 15 C 0.308 3.692 16 F -0.203 7.203 17 F -0.200 7.200 18 C -0.123 4.123 19 H 0.073 0.927 20 H 0.010 0.990 21 H 0.005 0.995 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.133 0.867 27 H 0.234 0.766 28 H 0.124 0.876 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.562 -17.563 3.997 18.851 hybrid contribution 0.264 0.977 0.398 1.088 sum 5.826 -16.585 4.395 18.120 Atomic orbital electron populations 1.70127 1.07956 1.27807 1.51391 1.26026 0.95780 1.03552 0.94546 0.85330 0.79065 0.78396 0.77812 1.18354 1.20304 1.20326 1.21667 0.93618 0.92144 1.50972 0.91870 1.18815 0.94155 0.92076 0.94845 1.22549 0.95746 0.89551 1.00210 1.68906 1.33742 1.01757 1.17002 1.24413 1.02933 0.94357 0.92633 1.23826 0.94723 0.90043 0.91043 1.88450 1.40785 1.36418 1.64232 1.23972 0.82636 0.81363 0.81252 1.93067 1.57277 1.92215 1.77724 1.93049 1.92958 1.73179 1.60814 1.24138 0.97101 0.90956 1.00083 0.92706 0.99015 0.99484 0.91389 0.94129 0.90433 0.90138 0.86706 0.76642 0.87626 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.80 15 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 15 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 15 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.55 -31.68 9.11 25.60 0.23 -31.44 15 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 15 9 C 0.04 2.13 5.30 29.85 0.16 2.29 15 10 C 0.05 2.04 4.76 86.30 0.41 2.45 15 11 N -0.49 -18.22 6.33 -928.30 -5.88 -24.10 15 12 C -0.01 -0.46 7.55 83.58 0.63 0.17 15 13 C 0.06 1.60 4.14 30.94 0.13 1.73 15 14 O -0.38 -8.38 10.69 -148.98 -1.59 -9.97 15 15 C 0.40 6.46 6.23 113.37 0.71 7.16 15 16 F -0.22 -4.67 17.15 44.97 0.77 -3.90 15 17 F -0.22 -4.19 16.84 44.97 0.76 -3.43 15 18 C 0.01 0.16 7.52 83.58 0.63 0.79 15 19 H 0.26 15.33 8.31 -92.71 -0.77 14.56 15 20 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 21 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 22 H 0.07 2.81 8.08 -2.39 -0.02 2.79 15 23 H 0.04 1.68 7.30 -2.39 -0.02 1.66 15 24 H 0.08 2.53 7.42 -2.39 -0.02 2.51 15 25 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 26 H 0.12 2.89 7.51 -2.39 -0.02 2.88 15 27 H 0.22 1.20 8.14 -2.39 -0.02 1.18 15 28 H 0.11 2.61 8.14 -2.39 -0.02 2.59 15 29 H 0.08 2.25 7.91 -2.39 -0.02 2.23 15 Total: -1.00 -68.70 260.20 0.87 -67.84 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.14 Total: 1.13 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 3.36 Total: -16.46 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -5.59 Total: -81.90 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.59 Total: -9.97 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 1.53 Total: -7.33 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.70 0.87 -67.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399853297.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.877 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds