Wall clock time and date at job start Mon Mar 30 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46577 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47768 * 65.00021 * 12 11 10 14 14 C 1.42898 * 114.00575 * 179.97438 * 13 12 11 15 15 H 1.09005 * 115.54556 * 355.57778 * 14 13 12 16 16 C 1.52999 * 117.50327 * 209.91170 * 14 13 12 17 17 C 1.52999 * 117.50212 * 141.24880 * 14 13 12 18 18 F 1.39907 * 117.49896 * 214.98072 * 17 14 13 19 19 F 1.39895 * 117.49717 * 359.97438 * 17 14 13 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.00901 * 111.00080 * 303.95356 * 10 9 7 24 24 H 1.09004 * 109.46573 * 299.99841 * 11 10 9 25 25 H 1.08991 * 109.47124 * 60.00106 * 11 10 9 26 26 H 1.09004 * 109.47058 * 184.99784 * 12 11 10 27 27 H 1.08994 * 109.47196 * 304.99205 * 12 11 10 28 28 H 1.08999 * 117.49317 * 359.97438 * 16 14 13 29 29 H 1.08994 * 117.50208 * 144.99523 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5054 -4.9070 0.0020 12 6 2.5304 -6.0429 0.0023 13 8 3.2723 -6.0148 1.2233 14 6 4.2617 -7.0408 1.3261 15 1 4.2811 -7.7589 0.5063 16 6 4.6012 -7.5571 2.7257 17 6 5.5978 -6.6715 1.9736 18 9 6.7510 -7.2818 1.4685 19 9 5.7577 -5.3551 2.4192 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 2.8400 -3.5490 -0.7804 24 1 0.8809 -4.9812 0.8923 25 1 0.8802 -4.9816 -0.8877 26 1 2.0137 -6.9986 -0.0868 27 1 3.2113 -5.9182 -0.8396 28 1 4.0703 -7.1139 3.5681 29 1 4.8441 -8.6149 2.8268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:28 Heat of formation + Delta-G solvation = -113.612012 kcal Electronic energy + Delta-G solvation = -14760.551838 eV Core-core repulsion = 11741.760950 eV Total energy + Delta-G solvation = -3018.790887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.59963 -47.26401 -38.48357 -35.80914 -34.27192 -32.52117 -28.87984 -25.25269 -22.82730 -22.26093 -22.16977 -21.47901 -18.17408 -17.23384 -16.87202 -16.21713 -15.93426 -15.37030 -14.51297 -14.08567 -13.94226 -13.73766 -13.53055 -13.48582 -13.10283 -13.04182 -12.29904 -11.90684 -11.50846 -11.24571 -11.01058 -10.65445 -10.50433 -10.35881 -10.04726 -9.31477 -8.61236 -8.38864 -7.38538 -6.35627 -4.03962 2.84197 3.03921 3.30767 3.46597 3.51983 3.68110 4.16715 4.49796 4.55604 4.64151 4.95450 4.97606 5.21383 5.32226 5.37923 5.41547 5.64924 5.67182 5.91282 6.18236 6.91348 7.06005 7.15367 7.78149 8.16238 8.46304 8.61150 8.89654 9.67535 11.04421 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.005637 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.278132 B = 4966.296644 C = 5516.823538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.076 2.924 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.183 3.817 10 N -0.675 5.675 11 C 0.056 3.944 12 C 0.066 3.934 13 O -0.317 6.317 14 C 0.026 3.974 15 H 0.130 0.870 16 C -0.180 4.180 17 C 0.183 3.817 18 F -0.166 7.166 19 F -0.148 7.148 20 H 0.266 0.734 21 H 0.019 0.981 22 H -0.025 1.025 23 H 0.330 0.670 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.129 0.871 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 -17.136 1.642 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.905 3.095 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.632 4.632 8 H 0.075 0.925 9 C 0.056 3.944 10 N -0.306 5.306 11 C -0.074 4.074 12 C -0.011 4.011 13 O -0.234 6.234 14 C -0.035 4.035 15 H 0.147 0.853 16 C -0.218 4.218 17 C 0.145 3.855 18 F -0.147 7.147 19 F -0.128 7.128 20 H 0.077 0.923 21 H 0.037 0.963 22 H -0.007 1.007 23 H 0.147 0.853 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.460 -15.298 2.474 17.199 hybrid contribution 0.109 -1.838 -1.079 2.134 sum 7.569 -17.136 1.396 18.785 Atomic orbital electron populations 1.70773 1.06888 1.30385 1.47159 1.25887 0.96493 1.02806 0.93804 0.83440 0.74727 0.74728 0.76649 1.21541 1.21304 1.21006 1.22040 0.94940 0.91212 1.55028 0.92466 1.19678 0.91198 0.89069 0.94444 1.60532 1.20517 1.00487 1.49068 1.21957 0.94483 0.90164 1.00774 1.22824 0.93832 0.98538 0.85901 1.88147 1.47782 1.48657 1.38805 1.23996 0.88476 0.93357 0.97636 0.85263 1.24839 0.97991 1.00905 0.98023 1.20843 0.81256 0.79544 1.03821 1.93010 1.51876 1.81986 1.87821 1.93084 1.96042 1.34288 1.89395 0.92335 0.96284 1.00739 0.85329 0.90706 0.94439 0.92782 0.92950 0.85314 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.58 13.65 55.43 0.76 -27.82 15 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 15 3 Si 1.08 26.11 29.90 -169.99 -5.08 21.02 15 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 15 7 C -0.59 -17.60 9.32 -34.44 -0.32 -17.92 15 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 9 C 0.18 4.92 4.75 -4.98 -0.02 4.89 15 10 N -0.68 -15.13 6.44 -115.06 -0.74 -15.87 15 11 C 0.06 0.98 6.07 -3.82 -0.02 0.96 15 12 C 0.07 0.90 6.09 37.16 0.23 1.12 15 13 O -0.32 -4.93 10.43 -35.23 -0.37 -5.30 15 14 C 0.03 0.30 6.42 -26.73 -0.17 0.13 15 15 H 0.13 1.08 7.93 -51.93 -0.41 0.67 15 16 C -0.18 -1.71 10.45 -26.69 -0.28 -1.99 15 17 C 0.18 2.39 5.26 -26.69 -0.14 2.25 15 18 F -0.17 -2.14 17.60 2.25 0.04 -2.10 15 19 F -0.15 -2.50 17.47 2.25 0.04 -2.46 15 20 H 0.27 8.27 7.22 -40.82 -0.29 7.98 15 21 H 0.02 0.55 8.01 -51.93 -0.42 0.13 15 22 H -0.02 -0.69 8.01 -51.93 -0.42 -1.10 15 23 H 0.33 7.07 8.72 -39.29 -0.34 6.73 15 24 H 0.07 1.35 8.14 -51.93 -0.42 0.92 15 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 28 H 0.13 1.25 8.14 -51.93 -0.42 0.83 15 29 H 0.13 0.80 8.14 -51.93 -0.42 0.37 15 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -33.58 267.19 -5.78 -39.36 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -3.62 Total: -0.62 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.83 Total: -10.26 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.02 Total: -43.69 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.37 Total: -5.30 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.08 Total: -4.55 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.58 -5.78 -39.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.251 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds