Wall clock time and date at job start Mon Mar 30 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46577 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47768 * 65.00021 * 12 11 10 14 14 C 1.42898 * 114.00575 * 179.97438 * 13 12 11 15 15 H 1.09005 * 115.54556 * 355.57778 * 14 13 12 16 16 C 1.52999 * 117.50327 * 209.91170 * 14 13 12 17 17 C 1.52999 * 117.50212 * 141.24880 * 14 13 12 18 18 F 1.39907 * 117.49896 * 214.98072 * 17 14 13 19 19 F 1.39895 * 117.49717 * 359.97438 * 17 14 13 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.00901 * 111.00080 * 303.95356 * 10 9 7 24 24 H 1.09004 * 109.46573 * 299.99841 * 11 10 9 25 25 H 1.08991 * 109.47124 * 60.00106 * 11 10 9 26 26 H 1.09004 * 109.47058 * 184.99784 * 12 11 10 27 27 H 1.08994 * 109.47196 * 304.99205 * 12 11 10 28 28 H 1.08999 * 117.49317 * 359.97438 * 16 14 13 29 29 H 1.08994 * 117.50208 * 144.99523 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5054 -4.9070 0.0020 12 6 2.5304 -6.0429 0.0023 13 8 3.2723 -6.0148 1.2233 14 6 4.2617 -7.0408 1.3261 15 1 4.2811 -7.7589 0.5063 16 6 4.6012 -7.5571 2.7257 17 6 5.5978 -6.6715 1.9736 18 9 6.7510 -7.2818 1.4685 19 9 5.7577 -5.3551 2.4192 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 2.8400 -3.5490 -0.7804 24 1 0.8809 -4.9812 0.8923 25 1 0.8802 -4.9816 -0.8877 26 1 2.0137 -6.9986 -0.0868 27 1 3.2113 -5.9182 -0.8396 28 1 4.0703 -7.1139 3.5681 29 1 4.8441 -8.6149 2.8268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:28 Heat of formation + Delta-G solvation = -138.541942 kcal Electronic energy + Delta-G solvation = -14761.632881 eV Core-core repulsion = 11741.760950 eV Total energy + Delta-G solvation = -3019.871930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.61370 -48.32936 -39.53618 -37.41262 -35.59721 -34.46747 -30.48445 -27.22632 -24.17894 -23.64534 -23.21629 -22.98759 -19.26020 -19.01938 -18.15826 -17.37298 -16.98546 -16.64897 -16.07423 -15.66789 -15.39010 -15.20562 -15.01098 -14.60849 -14.51915 -14.04982 -13.68834 -13.39168 -13.33871 -12.90050 -12.50708 -12.36672 -12.04836 -11.92156 -11.34384 -10.79163 -10.64200 -10.28053 -9.21932 -8.73857 -6.44358 1.51813 1.61670 1.80845 1.93598 2.18551 2.37481 2.53917 3.10729 3.36276 3.43953 3.62426 3.70972 4.07254 4.15076 4.26766 4.48662 4.57376 4.60318 4.74402 4.82559 4.85096 4.99044 5.68833 5.98615 6.08751 6.35983 6.53355 6.67575 7.37168 8.66254 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.005637 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.278132 B = 4966.296644 C = 5516.823538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.126 2.874 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.613 4.613 8 H 0.051 0.949 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.052 3.948 12 C 0.072 3.928 13 O -0.356 6.356 14 C 0.025 3.975 15 H 0.168 0.832 16 C -0.146 4.146 17 C 0.142 3.858 18 F -0.169 7.169 19 F -0.181 7.181 20 H 0.254 0.746 21 H -0.006 1.006 22 H -0.038 1.038 23 H 0.335 0.665 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 -18.518 1.333 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.234 4.234 3 Si 0.946 3.054 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.651 4.651 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.315 5.315 11 C -0.078 4.078 12 C -0.004 4.004 13 O -0.274 6.274 14 C -0.035 4.035 15 H 0.185 0.815 16 C -0.183 4.183 17 C 0.105 3.895 18 F -0.150 7.150 19 F -0.161 7.161 20 H 0.064 0.936 21 H 0.012 0.988 22 H -0.021 1.021 23 H 0.152 0.848 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.180 -16.726 2.158 18.744 hybrid contribution -0.115 -1.507 -0.971 1.797 sum 8.066 -18.233 1.187 19.973 Atomic orbital electron populations 1.70902 1.07820 1.29729 1.48821 1.27492 0.96574 1.06814 0.92529 0.82822 0.73923 0.70654 0.77954 1.19332 1.19931 1.20534 1.22406 0.94921 0.92809 1.55009 0.93030 1.19369 0.91278 0.90216 0.92553 1.60404 1.20178 1.01438 1.49527 1.22092 0.95730 0.89072 1.00883 1.22804 0.93341 0.98509 0.85750 1.88078 1.48904 1.50820 1.39585 1.24385 0.86122 0.92809 1.00161 0.81538 1.24965 0.94470 1.02226 0.96687 1.21456 0.81978 0.79085 1.06950 1.92993 1.52183 1.81728 1.88060 1.93002 1.96258 1.36925 1.89950 0.93632 0.98752 1.02061 0.84790 0.91854 0.92980 0.88432 0.91913 0.85655 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.17 13.65 21.45 0.29 -58.88 15 2 C -0.04 -2.19 5.46 84.65 0.46 -1.73 15 3 Si 1.13 52.07 29.90 68.60 2.05 54.12 15 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 7 C -0.61 -36.87 9.32 25.60 0.24 -36.63 15 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 15 9 C 0.19 10.68 4.75 85.55 0.41 11.09 15 10 N -0.68 -30.83 6.44 -517.93 -3.34 -34.16 15 11 C 0.05 1.75 6.07 86.30 0.52 2.27 15 12 C 0.07 1.78 6.09 71.98 0.44 2.22 15 13 O -0.36 -10.44 10.43 -148.98 -1.55 -11.99 15 14 C 0.03 0.51 6.42 30.59 0.20 0.71 15 15 H 0.17 2.04 7.93 -2.38 -0.02 2.02 15 16 C -0.15 -2.35 10.45 30.62 0.32 -2.03 15 17 C 0.14 3.54 5.26 30.62 0.16 3.70 15 18 F -0.17 -4.12 17.60 44.97 0.79 -3.33 15 19 F -0.18 -6.21 17.47 44.97 0.79 -5.42 15 20 H 0.25 16.26 7.22 -92.71 -0.67 15.59 15 21 H -0.01 -0.33 8.01 -2.39 -0.02 -0.35 15 22 H -0.04 -2.16 8.01 -2.39 -0.02 -2.17 15 23 H 0.33 14.34 8.72 -89.69 -0.78 13.56 15 24 H 0.06 2.27 8.14 -2.38 -0.02 2.26 15 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.10 1.60 8.14 -2.38 -0.02 1.58 15 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 28 H 0.13 2.15 8.14 -2.39 -0.02 2.13 15 29 H 0.17 1.31 8.14 -2.39 -0.02 1.29 15 Total: -1.00 -74.39 267.19 2.25 -72.14 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.47 Total: 7.94 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 2.75 Total: -20.41 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -3.04 Total: -93.04 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.55 Total: -11.99 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 1.58 Total: -8.76 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.05 Total: 54.12 kcal Total: -74.39 2.25 -72.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.400 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds