Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47213 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47065 * 64.99824 * 12 11 10 14 14 C 1.42892 * 114.00039 * 180.02562 * 13 12 11 15 15 H 1.08997 * 115.55296 * 4.33021 * 14 13 12 16 16 C 1.53006 * 117.50008 * 149.99924 * 14 13 12 17 17 C 1.53000 * 60.00288 * 107.48883 * 16 14 13 18 18 F 1.39898 * 117.50329 * 252.51384 * 17 16 14 19 19 F 1.39896 * 117.50063 * 107.48416 * 17 16 14 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 24 24 H 1.09006 * 109.46752 * 299.99746 * 11 10 9 25 25 H 1.09001 * 109.47540 * 59.99607 * 11 10 9 26 26 H 1.09001 * 109.46948 * 184.99660 * 12 11 10 27 27 H 1.08991 * 109.47009 * 305.00068 * 12 11 10 28 28 H 1.08999 * 117.50237 * 214.97753 * 16 14 13 29 29 H 1.09001 * 117.49895 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 8 3.2713 -6.0153 1.2234 14 6 4.2613 -7.0406 1.3261 15 1 4.3829 -7.6669 0.4424 16 6 5.5120 -6.7349 2.1528 17 6 4.4555 -7.7008 2.6927 18 9 3.6502 -7.2545 3.7460 19 9 4.7752 -9.0626 2.7125 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8412 -3.5489 -0.7792 24 1 0.8796 -4.9813 0.8906 25 1 0.8815 -4.9816 -0.8894 26 1 2.0137 -6.9985 -0.0881 27 1 3.2119 -5.9179 -0.8394 28 1 6.4563 -7.1604 1.8131 29 1 5.5795 -5.7517 2.6186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716761.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = -114.384708 kcal Electronic energy + Delta-G solvation = -14668.580452 eV Core-core repulsion = 11649.756057 eV Total energy + Delta-G solvation = -3018.824394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.68130 -47.35717 -38.49067 -35.82313 -34.28413 -32.54122 -28.89026 -25.27056 -22.82702 -22.30400 -22.18528 -21.49838 -18.22258 -17.24311 -16.91832 -16.25241 -15.96619 -15.41808 -14.50332 -14.11198 -14.03562 -13.78223 -13.62068 -13.48480 -13.10355 -13.07819 -12.19240 -12.07153 -11.53024 -11.21306 -11.00191 -10.65133 -10.50273 -10.43192 -10.08265 -9.33531 -8.64202 -8.40412 -7.41656 -6.37707 -4.06457 2.79944 3.01776 3.30895 3.45252 3.48810 3.64579 4.17458 4.46367 4.53057 4.61771 4.94448 4.98337 5.23179 5.33270 5.38395 5.39635 5.66264 5.67198 5.90536 6.19074 6.90243 7.05368 7.13762 7.75406 8.14001 8.44031 8.57714 8.87118 9.65344 11.02324 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.046678 B = 0.004934 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.713536 B = 5673.310161 C = 5913.610373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.077 2.923 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.182 3.818 10 N -0.675 5.675 11 C 0.056 3.944 12 C 0.066 3.934 13 O -0.317 6.317 14 C 0.028 3.972 15 H 0.130 0.870 16 C -0.176 4.176 17 C 0.178 3.822 18 F -0.153 7.153 19 F -0.166 7.166 20 H 0.267 0.733 21 H 0.019 0.981 22 H -0.025 1.025 23 H 0.329 0.671 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 -15.649 0.552 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.905 3.095 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.633 4.633 8 H 0.075 0.925 9 C 0.056 3.944 10 N -0.306 5.306 11 C -0.074 4.074 12 C -0.011 4.011 13 O -0.234 6.234 14 C -0.033 4.033 15 H 0.148 0.852 16 C -0.214 4.214 17 C 0.141 3.859 18 F -0.134 7.134 19 F -0.147 7.147 20 H 0.077 0.923 21 H 0.037 0.963 22 H -0.007 1.007 23 H 0.146 0.854 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.026 -13.869 1.414 16.608 hybrid contribution -0.216 -2.128 -0.835 2.296 sum 8.810 -15.997 0.580 18.272 Atomic orbital electron populations 1.70766 1.06900 1.30443 1.47011 1.25887 0.96502 1.02816 0.93810 0.83429 0.74501 0.74721 0.76820 1.21365 1.21458 1.21087 1.22025 0.94872 0.91213 1.55191 0.92501 1.19683 0.91232 0.89038 0.94495 1.60539 1.20510 1.00515 1.49026 1.21965 0.94545 0.90082 1.00844 1.22824 0.93925 0.98574 0.85756 1.88154 1.48338 1.47863 1.39015 1.24012 0.92555 0.93121 0.93568 0.85218 1.24828 0.95008 1.01149 1.00382 1.20949 0.99089 0.76872 0.89023 1.93045 1.73752 1.88121 1.58457 1.93007 1.92810 1.32114 1.96771 0.92281 0.96271 1.00701 0.85393 0.90660 0.94408 0.92890 0.92808 0.85481 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.37 13.65 55.43 0.76 -27.61 15 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 15 3 Si 1.08 25.68 29.90 -169.99 -5.08 20.60 15 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.59 -17.33 9.32 -34.44 -0.32 -17.65 15 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 15 9 C 0.18 4.84 4.75 -4.98 -0.02 4.82 15 10 N -0.68 -14.77 6.44 -115.05 -0.74 -15.51 15 11 C 0.06 0.97 6.07 -3.82 -0.02 0.95 15 12 C 0.07 0.90 6.09 37.16 0.23 1.12 15 13 O -0.32 -4.92 10.43 -35.23 -0.37 -5.29 15 14 C 0.03 0.33 6.43 -26.72 -0.17 0.16 15 15 H 0.13 1.09 7.93 -51.93 -0.41 0.67 15 16 C -0.18 -1.76 10.45 -26.73 -0.28 -2.04 15 17 C 0.18 2.21 5.26 -26.73 -0.14 2.07 15 18 F -0.15 -2.36 17.47 2.25 0.04 -2.32 15 19 F -0.17 -2.01 17.60 2.25 0.04 -1.97 15 20 H 0.27 8.25 7.22 -40.82 -0.29 7.95 15 21 H 0.02 0.55 8.01 -51.93 -0.42 0.13 15 22 H -0.02 -0.67 8.01 -51.93 -0.42 -1.09 15 23 H 0.33 6.79 8.72 -39.29 -0.34 6.44 15 24 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 28 H 0.13 0.88 8.14 -51.93 -0.42 0.46 15 29 H 0.13 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -32.87 267.19 -5.78 -38.65 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.62 Total: -0.29 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.83 Total: -10.28 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.02 Total: -43.12 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.37 Total: -5.29 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.87 -5.78 -38.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716761.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.736 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds