Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47213 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47065 * 64.99824 * 12 11 10 14 14 C 1.42892 * 114.00039 * 180.02562 * 13 12 11 15 15 H 1.08997 * 115.55296 * 4.33021 * 14 13 12 16 16 C 1.53006 * 117.50008 * 149.99924 * 14 13 12 17 17 C 1.53000 * 60.00288 * 107.48883 * 16 14 13 18 18 F 1.39898 * 117.50329 * 252.51384 * 17 16 14 19 19 F 1.39896 * 117.50063 * 107.48416 * 17 16 14 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 24 24 H 1.09006 * 109.46752 * 299.99746 * 11 10 9 25 25 H 1.09001 * 109.47540 * 59.99607 * 11 10 9 26 26 H 1.09001 * 109.46948 * 184.99660 * 12 11 10 27 27 H 1.08991 * 109.47009 * 305.00068 * 12 11 10 28 28 H 1.08999 * 117.50237 * 214.97753 * 16 14 13 29 29 H 1.09001 * 117.49895 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 8 3.2713 -6.0153 1.2234 14 6 4.2613 -7.0406 1.3261 15 1 4.3829 -7.6669 0.4424 16 6 5.5120 -6.7349 2.1528 17 6 4.4555 -7.7008 2.6927 18 9 3.6502 -7.2545 3.7460 19 9 4.7752 -9.0626 2.7125 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8412 -3.5489 -0.7792 24 1 0.8796 -4.9813 0.8906 25 1 0.8815 -4.9816 -0.8894 26 1 2.0137 -6.9985 -0.0881 27 1 3.2119 -5.9179 -0.8394 28 1 6.4563 -7.1604 1.8131 29 1 5.5795 -5.7517 2.6186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716761.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = -138.458242 kcal Electronic energy + Delta-G solvation = -14669.624358 eV Core-core repulsion = 11649.756057 eV Total energy + Delta-G solvation = -3019.868301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.65089 -48.36172 -39.54418 -37.41123 -35.59921 -34.46383 -30.48556 -27.21758 -24.17154 -23.66336 -23.22849 -23.00436 -19.26831 -19.01616 -18.17283 -17.37087 -16.98583 -16.69260 -16.01771 -15.66151 -15.53383 -15.07656 -15.03638 -14.63873 -14.53862 -14.06844 -13.70294 -13.45332 -13.27115 -12.89329 -12.52470 -12.36711 -12.03643 -11.89118 -11.34889 -10.79694 -10.62644 -10.29635 -9.22288 -8.72424 -6.43305 1.53981 1.63467 1.81714 1.89454 2.16655 2.37595 2.55857 3.12493 3.35335 3.44536 3.59274 3.69946 4.06190 4.14621 4.25950 4.48316 4.56219 4.62767 4.75560 4.81961 4.84929 4.99155 5.69330 5.99428 6.08265 6.36496 6.54297 6.69468 7.39185 8.67587 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.046678 B = 0.004934 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.713536 B = 5673.310161 C = 5913.610373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.039 4.039 3 Si 1.127 2.873 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.281 1.281 7 C -0.611 4.611 8 H 0.057 0.943 9 C 0.193 3.807 10 N -0.680 5.680 11 C 0.052 3.948 12 C 0.072 3.928 13 O -0.356 6.356 14 C 0.027 3.973 15 H 0.168 0.832 16 C -0.155 4.155 17 C 0.152 3.848 18 F -0.179 7.179 19 F -0.166 7.166 20 H 0.253 0.747 21 H -0.009 1.009 22 H -0.039 1.039 23 H 0.338 0.662 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.165 0.835 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.127 -16.157 -0.346 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.948 3.052 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.207 1.207 7 C -0.649 4.649 8 H 0.075 0.925 9 C 0.065 3.935 10 N -0.311 5.311 11 C -0.078 4.078 12 C -0.004 4.004 13 O -0.274 6.274 14 C -0.033 4.033 15 H 0.185 0.815 16 C -0.193 4.193 17 C 0.115 3.885 18 F -0.160 7.160 19 F -0.147 7.147 20 H 0.063 0.937 21 H 0.009 0.991 22 H -0.022 1.022 23 H 0.156 0.844 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.183 0.817 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.948 -14.425 0.513 18.117 hybrid contribution -0.820 -2.073 -0.537 2.293 sum 10.128 -16.498 -0.023 19.359 Atomic orbital electron populations 1.70902 1.07981 1.29699 1.48936 1.27533 0.96542 1.06975 0.92568 0.82814 0.74162 0.70521 0.77748 1.20045 1.19019 1.20679 1.22407 0.95108 0.92547 1.54838 0.92479 1.19378 0.91363 0.90403 0.92404 1.60393 1.20009 1.01062 1.49638 1.22068 0.95786 0.89350 1.00592 1.22787 0.93627 0.97951 0.85994 1.88086 1.49669 1.49651 1.39970 1.24381 0.92065 0.92602 0.94243 0.81502 1.24948 0.95798 0.99975 0.98566 1.21343 1.00740 0.77325 0.89104 1.92984 1.74753 1.88470 1.59781 1.93000 1.92822 1.32120 1.96755 0.93729 0.99126 1.02166 0.84410 0.92549 0.93016 0.89726 0.90521 0.81743 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.03 13.65 21.45 0.29 -58.73 15 2 C -0.04 -2.30 5.46 84.65 0.46 -1.83 15 3 Si 1.13 50.82 29.90 68.60 2.05 52.87 15 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 7 C -0.61 -35.79 9.32 25.60 0.24 -35.55 15 8 H 0.06 3.28 7.81 -2.91 -0.02 3.25 15 9 C 0.19 10.46 4.75 85.56 0.41 10.86 15 10 N -0.68 -29.57 6.44 -517.91 -3.34 -32.91 15 11 C 0.05 1.76 6.07 86.30 0.52 2.28 15 12 C 0.07 1.79 6.09 71.98 0.44 2.23 15 13 O -0.36 -10.44 10.43 -148.98 -1.55 -11.99 15 14 C 0.03 0.55 6.43 30.60 0.20 0.75 15 15 H 0.17 2.06 7.93 -2.39 -0.02 2.04 15 16 C -0.16 -2.72 10.45 30.60 0.32 -2.40 15 17 C 0.15 3.55 5.26 30.60 0.16 3.71 15 18 F -0.18 -5.55 17.47 44.97 0.79 -4.76 15 19 F -0.17 -3.74 17.60 44.97 0.79 -2.95 15 20 H 0.25 16.18 7.22 -92.71 -0.67 15.51 15 21 H -0.01 -0.55 8.01 -2.39 -0.02 -0.57 15 22 H -0.04 -2.20 8.01 -2.38 -0.02 -2.22 15 23 H 0.34 13.58 8.72 -89.69 -0.78 12.80 15 24 H 0.06 2.11 8.14 -2.38 -0.02 2.09 15 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 15 28 H 0.16 1.60 8.14 -2.39 -0.02 1.58 15 29 H 0.12 2.42 8.14 -2.39 -0.02 2.40 15 Total: -1.00 -72.12 267.19 2.25 -69.86 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.47 Total: 8.57 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 2.75 Total: -19.96 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -3.04 Total: -91.64 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.55 Total: -11.99 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 1.58 Total: -7.71 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -72.12 2.25 -69.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716761.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.593 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds