Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46972 * 299.99856 * 3 2 1 6 6 H 1.48497 * 109.47348 * 60.00176 * 3 2 1 7 7 C 1.37878 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.46830 * 110.98168 * 294.21614 * 10 9 7 12 12 C 1.53038 * 109.51757 * 174.15669 * 11 10 9 13 13 C 1.53127 * 109.27941 * 59.17550 * 12 11 10 14 14 H 1.09004 * 109.51868 * 62.24855 * 13 12 11 15 15 O 1.42901 * 109.57542 * 182.41093 * 13 12 11 16 16 C 1.53117 * 109.15989 * 302.34585 * 13 12 11 17 17 F 1.39901 * 109.50789 * 297.71707 * 16 13 12 18 18 F 1.39899 * 109.50269 * 177.59031 * 16 13 12 19 19 C 1.46847 * 111.00144 * 170.00196 * 10 9 7 20 20 H 0.97000 * 119.99990 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47398 * 60.00458 * 9 7 2 22 22 H 1.09002 * 109.47205 * 299.99840 * 9 7 2 23 23 H 1.08995 * 109.46742 * 54.13906 * 11 10 9 24 24 H 1.09004 * 109.45381 * 294.16241 * 11 10 9 25 25 H 1.08997 * 109.50308 * 299.23764 * 12 11 10 26 26 H 1.09000 * 109.50697 * 179.11489 * 12 11 10 27 27 H 0.96697 * 113.99604 * 299.71545 * 15 13 12 28 28 H 1.09002 * 109.46448 * 65.81961 * 19 10 9 29 29 H 1.08994 * 109.45958 * 305.84326 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9748 -3.6499 -1.2508 12 6 4.0548 -4.7301 -1.1574 13 6 3.3920 -6.0875 -0.9066 14 1 2.7450 -6.3377 -1.7474 15 8 4.3979 -7.0921 -0.7623 16 6 2.5582 -6.0104 0.3754 17 9 3.3963 -5.7382 1.4620 18 9 1.9054 -7.2303 0.5820 19 6 1.5215 -4.8931 0.2375 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 3.4443 -2.6801 -1.4151 24 1 2.3066 -3.8754 -2.0820 25 1 4.7314 -4.4980 -0.3349 26 1 4.6154 -4.7660 -2.0915 27 1 4.9646 -7.1956 -1.5390 28 1 0.8602 -5.1126 -0.6008 29 1 0.9357 -4.8259 1.1542 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595663141.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -173.766311 kcal Electronic energy + Delta-G solvation = -15869.418768 eV Core-core repulsion = 12848.019394 eV Total energy + Delta-G solvation = -3021.399374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.94814 -47.97718 -39.78967 -37.65592 -34.94938 -32.66622 -31.31402 -28.67930 -25.57229 -24.39071 -23.10367 -21.17602 -18.74316 -18.57977 -18.40806 -17.81886 -17.06205 -16.64655 -16.12686 -15.70980 -15.04813 -14.83472 -14.58342 -14.46599 -14.33812 -14.19277 -13.46526 -13.42126 -13.06176 -12.79391 -12.63631 -12.40080 -12.22214 -11.95003 -11.41094 -11.31895 -11.06750 -10.63386 -9.18688 -8.22222 -6.32006 1.42211 1.44066 1.56719 2.36098 2.47410 2.84853 3.02412 3.07406 3.13156 3.47836 3.74099 3.97658 4.11878 4.29098 4.40567 4.46400 4.65303 4.68093 4.96329 5.06343 5.23178 5.26123 5.61157 5.97344 6.18417 6.44000 6.72102 6.82750 7.37814 8.89237 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.050146 B = 0.007589 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.238641 B = 3688.608547 C = 3933.659578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.056 3.944 12 C -0.136 4.136 13 C 0.078 3.922 14 H 0.105 0.895 15 O -0.568 6.568 16 C 0.298 3.702 17 F -0.200 7.200 18 F -0.203 7.203 19 C 0.018 3.982 20 H 0.265 0.735 21 H -0.023 1.023 22 H 0.006 0.994 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.120 0.880 27 H 0.407 0.593 28 H 0.073 0.927 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -10.506 -5.352 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.268 5.268 11 C -0.072 4.072 12 C -0.174 4.174 13 C 0.018 3.982 14 H 0.123 0.877 15 O -0.378 6.378 16 C 0.261 3.739 17 F -0.181 7.181 18 F -0.184 7.184 19 C -0.112 4.112 20 H 0.074 0.926 21 H -0.005 1.005 22 H 0.024 0.976 23 H 0.099 0.901 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.138 0.862 27 H 0.259 0.741 28 H 0.091 0.909 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.832 -10.410 -4.363 13.194 hybrid contribution -0.450 0.785 -0.688 1.137 sum 6.382 -9.625 -5.051 12.605 Atomic orbital electron populations 1.70079 1.07701 1.27953 1.51631 1.25873 0.95701 1.03110 0.94703 0.85328 0.79020 0.78585 0.77644 1.18657 1.20268 1.20771 1.21448 0.93740 0.90746 1.50256 0.91630 1.19405 0.89889 0.88088 0.94274 1.61884 1.27210 1.01414 1.36321 1.22101 0.95363 1.00228 0.89506 1.22302 0.98351 0.91972 1.04794 1.22726 0.90968 0.89970 0.94553 0.87748 1.86517 1.48136 1.56878 1.46298 1.21314 0.86459 0.80858 0.85221 1.92971 1.73094 1.93833 1.58232 1.92970 1.82410 1.47116 1.95923 1.22912 0.94544 0.89601 1.04097 0.92612 1.00484 0.97605 0.90066 0.94198 0.91188 0.86167 0.74068 0.90898 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 13.29 21.45 0.28 -54.42 15 2 C 0.00 0.25 5.46 84.65 0.46 0.71 15 3 Si 0.97 43.11 29.54 68.60 2.03 45.14 15 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.52 -28.67 8.43 25.60 0.22 -28.45 15 8 H 0.07 3.52 7.12 -2.91 -0.02 3.50 15 9 C 0.21 10.72 4.72 85.56 0.40 11.12 15 10 N -0.54 -22.67 4.58 -900.96 -4.13 -26.80 15 11 C 0.06 1.91 5.29 86.33 0.46 2.36 15 12 C -0.14 -3.52 5.60 30.65 0.17 -3.35 15 13 C 0.08 2.00 3.09 30.68 0.09 2.09 15 14 H 0.10 2.17 8.14 -2.38 -0.02 2.15 15 15 O -0.57 -13.41 13.22 -148.98 -1.97 -15.38 15 16 C 0.30 9.93 1.83 30.65 0.06 9.98 15 17 F -0.20 -7.77 16.51 44.97 0.74 -7.03 15 18 F -0.20 -6.78 17.04 44.97 0.77 -6.01 15 19 C 0.02 0.65 4.95 86.33 0.43 1.08 15 20 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 21 H -0.02 -1.22 8.12 -2.39 -0.02 -1.24 15 22 H 0.01 0.33 7.99 -2.39 -0.02 0.31 15 23 H 0.08 3.05 6.70 -2.39 -0.02 3.04 15 24 H 0.04 1.27 8.14 -2.38 -0.02 1.25 15 25 H 0.07 2.10 7.91 -2.39 -0.02 2.08 15 26 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.41 4.79 9.09 -74.06 -0.67 4.12 15 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 29 H 0.09 3.27 8.01 -2.39 -0.02 3.25 15 Total: -1.00 -66.19 250.69 0.50 -65.69 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 0.49 Total: 3.27 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 2.29 Total: -4.46 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.85 Total: -81.23 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.97 Total: -15.38 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 1.51 Total: -13.04 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.19 0.50 -65.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595663141.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.077 kcal (2) G-P(sol) polarization free energy of solvation -66.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds