Wall clock time and date at job start Mon Mar 30 2020 03:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48493 * 109.47185 * 270.00442 * 3 2 1 5 5 H 1.48499 * 109.46778 * 30.00335 * 3 2 1 6 6 H 1.48500 * 109.47069 * 150.00059 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00506 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99934 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.46854 * 110.99648 * 65.74718 * 10 9 7 12 12 C 1.53037 * 109.52285 * 185.80147 * 11 10 9 13 13 C 1.53114 * 109.31211 * 300.88400 * 12 11 10 14 14 H 1.09007 * 109.52681 * 297.73305 * 13 12 11 15 15 O 1.42901 * 109.52716 * 177.60360 * 13 12 11 16 16 C 1.53125 * 109.16368 * 57.63311 * 13 12 11 17 17 F 1.39901 * 109.49826 * 62.28534 * 16 13 12 18 18 F 1.39898 * 109.50528 * 182.40595 * 16 13 12 19 19 C 1.46840 * 111.00367 * 190.00157 * 10 9 7 20 20 H 0.97001 * 120.00299 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46817 * 60.00052 * 9 7 2 22 22 H 1.08994 * 109.47234 * 300.00072 * 9 7 2 23 23 H 1.09000 * 109.42692 * 65.80880 * 11 10 9 24 24 H 1.09000 * 109.49358 * 305.83873 * 11 10 9 25 25 H 1.09002 * 109.50283 * 180.92217 * 12 11 10 26 26 H 1.09003 * 109.50113 * 60.84405 * 12 11 10 27 27 H 0.96696 * 114.00348 * 179.97438 * 15 13 12 28 28 H 1.09001 * 109.46294 * 54.14190 * 19 10 9 29 29 H 1.09005 * 109.46534 * 294.17986 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 3.6452 -3.2630 -1.2507 12 6 4.0419 -4.7382 -1.1572 13 6 5.5488 -4.8424 -0.9068 14 1 6.0889 -4.4075 -1.7479 15 8 5.9152 -6.2162 -0.7631 16 6 5.8992 -4.0813 0.3748 17 9 5.2449 -4.6709 1.4618 18 9 7.2822 -4.1256 0.5811 19 6 5.4496 -2.6250 0.2365 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6803 0.8889 22 1 3.8745 -0.6800 -0.8911 23 1 4.1736 -2.7969 -2.0824 24 1 2.5704 -3.1856 -1.4143 25 1 3.7924 -5.2420 -2.0910 26 1 3.5029 -5.2084 -0.3347 27 1 6.8582 -6.3570 -0.6021 28 1 5.6847 -2.0838 1.1530 29 1 5.9701 -2.1623 -0.6020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595663142.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:37 Heat of formation + Delta-G solvation = -146.125569 kcal Electronic energy + Delta-G solvation = -15917.699091 eV Core-core repulsion = 12897.498310 eV Total energy + Delta-G solvation = -3020.200781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.78395 -46.74648 -38.46466 -36.47809 -32.94946 -31.45634 -29.97774 -27.37876 -23.80981 -23.10142 -21.16527 -19.85374 -17.88703 -17.19214 -17.04892 -16.27431 -16.07857 -14.88840 -14.48584 -14.24311 -13.76643 -13.60862 -13.38522 -13.06908 -12.95720 -12.49366 -12.28809 -11.95838 -11.63407 -11.35593 -11.20212 -10.77988 -10.58292 -10.43498 -9.94330 -9.76378 -9.39268 -8.66281 -7.67766 -6.13088 -4.12078 3.22038 3.30769 3.31223 3.70586 3.90269 4.15393 4.33889 4.35259 4.56138 4.79997 5.12402 5.19303 5.35517 5.60156 5.63819 5.73760 5.84677 5.88200 6.40957 6.43296 6.66654 6.78983 7.38128 7.40998 7.62960 7.79311 8.52054 8.94604 9.47020 10.99638 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.048481 B = 0.008093 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.408568 B = 3458.794917 C = 3724.536243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.165 3.835 10 N -0.520 5.520 11 C 0.059 3.941 12 C -0.112 4.112 13 C 0.075 3.925 14 H 0.079 0.921 15 O -0.551 6.551 16 C 0.261 3.739 17 F -0.180 7.180 18 F -0.208 7.208 19 C 0.015 3.985 20 H 0.265 0.735 21 H 0.033 0.967 22 H -0.011 1.011 23 H 0.029 0.971 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.379 0.621 28 H 0.095 0.905 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.576 -6.701 -2.891 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.102 0.898 9 C 0.039 3.961 10 N -0.245 5.245 11 C -0.069 4.069 12 C -0.149 4.149 13 C 0.015 3.985 14 H 0.097 0.903 15 O -0.356 6.356 16 C 0.224 3.776 17 F -0.160 7.160 18 F -0.189 7.189 19 C -0.115 4.115 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.007 0.993 23 H 0.048 0.952 24 H 0.126 0.874 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.227 0.773 28 H 0.114 0.886 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.549 -6.914 -2.568 13.703 hybrid contribution 1.577 1.474 -0.342 2.185 sum 13.126 -5.441 -2.910 14.504 Atomic orbital electron populations 1.69880 1.06115 1.27006 1.50447 1.24877 0.94743 0.98824 0.94661 0.86871 0.80360 0.84055 0.78500 1.20263 1.21005 1.19213 1.20970 0.88287 0.94964 1.51046 0.89845 1.20216 0.97516 0.82778 0.95554 1.61843 1.07699 1.20086 1.34847 1.22132 1.03836 0.90938 0.90007 1.21674 0.90928 0.98336 1.04004 1.22924 0.99644 0.82448 0.93513 0.90323 1.86578 1.30529 1.23676 1.94802 1.21945 0.73116 0.95921 0.86651 1.93028 1.80585 1.85570 1.56860 1.92958 1.32514 1.97413 1.96013 1.22936 0.92854 0.92058 1.03621 0.92497 0.94924 0.99317 0.95249 0.87392 0.89807 0.89296 0.77327 0.88632 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.96 55.43 0.77 -25.97 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 15 7 C -0.51 -14.08 8.98 -34.44 -0.31 -14.39 15 8 H 0.08 2.48 7.36 -52.49 -0.39 2.10 15 9 C 0.16 3.81 3.79 -4.98 -0.02 3.80 15 10 N -0.52 -10.45 4.58 -236.11 -1.08 -11.53 15 11 C 0.06 1.04 5.30 -3.83 -0.02 1.02 15 12 C -0.11 -1.69 5.62 -26.65 -0.15 -1.84 15 13 C 0.07 1.04 3.11 -26.61 -0.08 0.96 15 14 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 15 O -0.55 -7.32 13.24 -35.23 -0.47 -7.79 15 16 C 0.26 4.08 1.84 -26.65 -0.05 4.03 15 17 F -0.18 -3.30 16.51 2.25 0.04 -3.26 15 18 F -0.21 -3.01 16.78 2.25 0.04 -2.97 15 19 C 0.02 0.26 4.95 -3.84 -0.02 0.24 15 20 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.03 0.77 7.04 -51.93 -0.37 0.40 15 22 H -0.01 -0.24 7.55 -51.93 -0.39 -0.64 15 23 H 0.03 0.48 8.14 -51.93 -0.42 0.05 15 24 H 0.11 2.13 6.70 -51.93 -0.35 1.78 15 25 H 0.08 1.10 8.14 -51.93 -0.42 0.67 15 26 H 0.09 1.51 7.91 -51.93 -0.41 1.10 15 27 H 0.38 3.56 8.82 45.56 0.40 3.96 15 28 H 0.10 1.59 8.01 -51.93 -0.42 1.17 15 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 246.63 15.07 3.72 3.72 Total: -1.00 -30.35 246.63 -5.17 -35.52 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.77 Total: 0.47 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.75 Total: -4.29 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.31 Total: -37.50 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.47 Total: -7.79 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.07 Total: -6.23 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.35 -5.17 -35.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595663142.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.601 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds