Wall clock time and date at job start Mon Mar 30 2020 03:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55516 * 2 1 4 4 F 1.39901 * 109.47024 * 180.13186 * 3 2 1 5 5 F 1.39901 * 109.47055 * 300.12625 * 3 2 1 6 6 C 1.53292 * 109.51360 * 239.87256 * 2 1 3 7 7 N 1.47233 * 108.40299 * 292.38347 * 6 2 1 8 8 C 1.36938 * 121.03150 * 129.45891 * 7 6 2 9 9 H 1.07995 * 120.00241 * 206.17702 * 8 7 6 10 10 C 1.38816 * 119.99718 * 26.17954 * 8 7 6 11 11 N 1.31615 * 120.00526 * 16.89599 * 10 8 7 12 12 Si 1.86806 * 119.99896 * 196.89669 * 10 8 7 13 13 H 1.48504 * 109.46919 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47372 * 119.99555 * 12 10 8 15 15 H 1.48500 * 109.47051 * 240.00016 * 12 10 8 16 16 C 1.47151 * 117.98790 * 309.48233 * 7 6 2 17 17 C 1.53300 * 108.41429 * 50.51917 * 16 7 6 18 18 O 1.42962 * 109.22183 * 307.68047 * 17 16 7 19 19 H 1.09005 * 109.47000 * 299.87605 * 1 2 3 20 20 H 1.09000 * 109.46959 * 59.86855 * 1 2 3 21 21 H 1.09000 * 109.47652 * 179.87596 * 1 2 3 22 22 H 1.08997 * 109.47477 * 60.12594 * 3 2 1 23 23 H 1.09001 * 109.68446 * 52.09853 * 6 2 1 24 24 H 1.08991 * 109.68807 * 172.65669 * 6 2 1 25 25 H 0.97002 * 120.00383 * 180.02562 * 11 10 8 26 26 H 1.09001 * 109.67883 * 290.77953 * 16 7 6 27 27 H 1.08994 * 109.68171 * 170.26092 * 16 7 6 28 28 H 1.09004 * 109.51066 * 67.60375 * 17 16 7 29 29 H 1.09001 * 109.51236 * 187.70563 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 9 3.4411 1.4397 -0.0030 5 9 1.5743 2.1028 -1.1408 6 6 2.0420 -0.7252 -1.2497 7 7 1.6958 -2.1516 -1.1339 8 6 1.0611 -2.8090 -2.1538 9 1 0.4490 -3.6729 -1.9411 10 6 1.2046 -2.3649 -3.4612 11 7 2.1854 -1.5449 -3.7739 12 14 0.0055 -2.9313 -4.7769 13 1 -0.9978 -3.8440 -4.1723 14 1 -0.6845 -1.7520 -5.3585 15 1 0.7460 -3.6486 -5.8457 16 6 2.0521 -2.8498 0.1114 17 6 1.5396 -2.0210 1.2949 18 8 2.0075 -0.6763 1.1655 19 1 -0.3633 0.5119 0.8911 20 1 -0.3633 0.5159 -0.8888 21 1 -0.3634 -1.0276 -0.0022 22 1 1.6814 1.9555 0.8911 23 1 1.5704 -0.3042 -2.1376 24 1 3.1240 -0.6149 -1.3208 25 1 2.2855 -1.2343 -4.6874 26 1 3.1351 -2.9532 0.1773 27 1 1.5876 -3.8357 0.1253 28 1 0.4496 -2.0283 1.2996 29 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595917706.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:17 Heat of formation + Delta-G solvation = -122.044702 kcal Electronic energy + Delta-G solvation = -16487.059052 eV Core-core repulsion = 13467.902496 eV Total energy + Delta-G solvation = -3019.156556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.46350 -46.44894 -38.87221 -34.52692 -32.37095 -31.27933 -28.02285 -26.13198 -25.67169 -23.23937 -21.52963 -18.83415 -17.50162 -16.82574 -16.68452 -16.08988 -15.34859 -14.56553 -14.14864 -13.92673 -13.60236 -13.29866 -13.03813 -12.82999 -12.70488 -12.32303 -11.71359 -11.60059 -11.18392 -10.93487 -10.75531 -10.64458 -10.34755 -10.24995 -9.89990 -9.57812 -9.12048 -8.55431 -6.76864 -5.84716 -3.29080 3.33771 3.41302 3.43456 3.77770 4.38630 4.47532 4.74078 4.99066 5.34523 5.40949 5.44106 5.62878 5.75278 5.87900 5.90310 6.08088 6.18389 6.36994 6.52021 6.67136 6.78287 7.05143 7.45950 7.68189 7.74758 8.31444 9.08725 9.72444 10.29572 11.23423 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.012220 C = 0.010275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.142154 B = 2290.717640 C = 2724.499821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.039 3.961 3 C 0.283 3.717 4 F -0.199 7.199 5 F -0.196 7.196 6 C 0.156 3.844 7 N -0.591 5.591 8 C -0.258 4.258 9 H 0.070 0.930 10 C 0.004 3.996 11 N -0.899 5.899 12 Si 0.904 3.096 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.289 1.289 16 C 0.107 3.893 17 C 0.048 3.952 18 O -0.378 6.378 19 H 0.049 0.951 20 H 0.070 0.930 21 H 0.082 0.918 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.035 0.965 25 H 0.256 0.744 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 3.577 8.456 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 C 0.229 3.771 4 F -0.180 7.180 5 F -0.178 7.178 6 C 0.030 3.970 7 N -0.314 5.314 8 C -0.387 4.387 9 H 0.088 0.912 10 C -0.195 4.195 11 N -0.543 5.543 12 Si 0.733 3.267 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.216 1.216 16 C -0.019 4.019 17 C -0.030 4.030 18 O -0.298 6.298 19 H 0.068 0.932 20 H 0.089 0.911 21 H 0.101 0.899 22 H 0.122 0.878 23 H 0.120 0.880 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.712 3.713 8.376 9.555 hybrid contribution -0.572 -0.347 -1.003 1.206 sum -3.285 3.367 7.373 8.746 Atomic orbital electron populations 1.22176 0.94046 1.04289 1.01559 1.23222 0.95014 0.90793 0.91292 1.21520 0.75673 0.93370 0.86539 1.92963 1.30822 1.97337 1.96928 1.92976 1.88328 1.81804 1.54674 1.21372 0.98257 0.84130 0.93224 1.44028 1.68622 1.04817 1.13944 1.19200 1.21872 1.12265 0.85345 0.91209 1.25076 0.97285 0.99986 0.97174 1.70024 1.29189 1.36551 1.18529 0.86209 0.80701 0.78033 0.81746 1.20200 1.21397 1.21592 1.21618 0.97740 0.95269 0.87265 1.23106 0.98510 0.82286 0.99088 1.87748 1.72902 1.26514 1.42616 0.93175 0.91109 0.89939 0.87817 0.88019 0.94688 0.93385 0.95464 0.91747 0.93076 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.97 37.16 0.30 -2.61 15 2 C 0.04 0.77 0.78 -90.47 -0.07 0.70 15 3 C 0.28 5.07 4.55 37.16 0.17 5.24 15 4 F -0.20 -3.95 16.64 2.25 0.04 -3.92 15 5 F -0.20 -3.71 16.47 2.25 0.04 -3.67 15 6 C 0.16 3.86 3.86 -3.49 -0.01 3.85 15 7 N -0.59 -14.86 2.57 -171.77 -0.44 -15.30 15 8 C -0.26 -6.98 9.65 -15.06 -0.15 -7.12 15 9 H 0.07 1.83 7.88 -52.49 -0.41 1.42 15 10 C 0.00 0.11 4.95 -17.43 -0.09 0.02 15 11 N -0.90 -26.33 11.14 55.49 0.62 -25.71 15 12 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 15 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 16 C 0.11 2.25 6.73 -3.53 -0.02 2.23 15 17 C 0.05 0.85 6.60 37.31 0.25 1.09 15 18 O -0.38 -7.39 10.17 -35.23 -0.36 -7.75 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.07 1.28 7.80 -51.93 -0.41 0.87 15 21 H 0.08 1.57 6.11 -51.93 -0.32 1.25 15 22 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 23 H 0.10 2.78 6.04 -51.93 -0.31 2.46 15 24 H 0.04 0.96 7.61 -51.93 -0.40 0.57 15 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 27 H 0.06 1.26 7.96 -51.93 -0.41 0.84 15 28 H 0.05 0.86 6.25 -51.93 -0.32 0.54 15 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 LS Contribution 243.53 15.07 3.67 3.67 Total: -1.00 -30.11 243.53 -4.50 -34.61 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -3.41 Total: -1.82 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 0.37 Total: 3.41 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.18 Total: -41.01 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.36 Total: -7.75 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.07 Total: -7.59 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.11 -4.50 -34.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595917706.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.431 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds