Wall clock time and date at job start Mon Mar 30 2020 03:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55516 * 2 1 4 4 F 1.39901 * 109.47024 * 180.13186 * 3 2 1 5 5 F 1.39901 * 109.47055 * 300.12625 * 3 2 1 6 6 C 1.53292 * 109.51360 * 239.87256 * 2 1 3 7 7 N 1.47233 * 108.40299 * 292.38347 * 6 2 1 8 8 C 1.36938 * 121.03150 * 129.45891 * 7 6 2 9 9 H 1.07995 * 120.00241 * 206.17702 * 8 7 6 10 10 C 1.38816 * 119.99718 * 26.17954 * 8 7 6 11 11 N 1.31615 * 120.00526 * 16.89599 * 10 8 7 12 12 Si 1.86806 * 119.99896 * 196.89669 * 10 8 7 13 13 H 1.48504 * 109.46919 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47372 * 119.99555 * 12 10 8 15 15 H 1.48500 * 109.47051 * 240.00016 * 12 10 8 16 16 C 1.47151 * 117.98790 * 309.48233 * 7 6 2 17 17 C 1.53300 * 108.41429 * 50.51917 * 16 7 6 18 18 O 1.42962 * 109.22183 * 307.68047 * 17 16 7 19 19 H 1.09005 * 109.47000 * 299.87605 * 1 2 3 20 20 H 1.09000 * 109.46959 * 59.86855 * 1 2 3 21 21 H 1.09000 * 109.47652 * 179.87596 * 1 2 3 22 22 H 1.08997 * 109.47477 * 60.12594 * 3 2 1 23 23 H 1.09001 * 109.68446 * 52.09853 * 6 2 1 24 24 H 1.08991 * 109.68807 * 172.65669 * 6 2 1 25 25 H 0.97002 * 120.00383 * 180.02562 * 11 10 8 26 26 H 1.09001 * 109.67883 * 290.77953 * 16 7 6 27 27 H 1.08994 * 109.68171 * 170.26092 * 16 7 6 28 28 H 1.09004 * 109.51066 * 67.60375 * 17 16 7 29 29 H 1.09001 * 109.51236 * 187.70563 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 9 3.4411 1.4397 -0.0030 5 9 1.5743 2.1028 -1.1408 6 6 2.0420 -0.7252 -1.2497 7 7 1.6958 -2.1516 -1.1339 8 6 1.0611 -2.8090 -2.1538 9 1 0.4490 -3.6729 -1.9411 10 6 1.2046 -2.3649 -3.4612 11 7 2.1854 -1.5449 -3.7739 12 14 0.0055 -2.9313 -4.7769 13 1 -0.9978 -3.8440 -4.1723 14 1 -0.6845 -1.7520 -5.3585 15 1 0.7460 -3.6486 -5.8457 16 6 2.0521 -2.8498 0.1114 17 6 1.5396 -2.0210 1.2949 18 8 2.0075 -0.6763 1.1655 19 1 -0.3633 0.5119 0.8911 20 1 -0.3633 0.5159 -0.8888 21 1 -0.3634 -1.0276 -0.0022 22 1 1.6814 1.9555 0.8911 23 1 1.5704 -0.3042 -2.1376 24 1 3.1240 -0.6149 -1.3208 25 1 2.2855 -1.2343 -4.6874 26 1 3.1351 -2.9532 0.1773 27 1 1.5876 -3.8357 0.1253 28 1 0.4496 -2.0283 1.2996 29 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595917706.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:16 Heat of formation + Delta-G solvation = -141.938510 kcal Electronic energy + Delta-G solvation = -16487.921712 eV Core-core repulsion = 13467.902496 eV Total energy + Delta-G solvation = -3020.019217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.93385 -47.93809 -40.48402 -36.40574 -33.92864 -33.25132 -29.67423 -27.92478 -27.26489 -25.03881 -23.21091 -20.49122 -19.23441 -18.32483 -18.25928 -17.76150 -17.04220 -16.37018 -15.83931 -15.59564 -15.28514 -14.87943 -14.72132 -14.48300 -14.32337 -13.87374 -13.21482 -13.13947 -12.95555 -12.80892 -12.51462 -12.37627 -12.13535 -12.05346 -11.70277 -11.12197 -10.84813 -10.57681 -8.78143 -7.92766 -5.40873 1.44552 1.46173 1.56981 2.31154 2.45742 3.06661 3.19036 3.26342 3.50957 3.78511 3.93283 4.12046 4.24522 4.42251 4.44898 4.61850 4.69178 4.86561 4.96139 5.01243 5.13873 5.29535 5.45934 5.58163 6.15525 6.27536 7.01806 7.71364 8.25913 9.13609 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.012220 C = 0.010275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.142154 B = 2290.717640 C = 2724.499821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.043 3.957 3 C 0.278 3.722 4 F -0.214 7.214 5 F -0.206 7.206 6 C 0.166 3.834 7 N -0.608 5.608 8 C -0.262 4.262 9 H 0.078 0.922 10 C -0.053 4.053 11 N -0.938 5.938 12 Si 0.970 3.030 13 H -0.260 1.260 14 H -0.290 1.290 15 H -0.294 1.294 16 C 0.099 3.901 17 C 0.053 3.947 18 O -0.380 6.380 19 H 0.091 0.909 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.161 0.839 23 H 0.069 0.931 24 H -0.010 1.010 25 H 0.250 0.750 26 H 0.012 0.988 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 3.499 10.243 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.001 3.999 3 C 0.224 3.776 4 F -0.196 7.196 5 F -0.187 7.187 6 C 0.039 3.961 7 N -0.332 5.332 8 C -0.392 4.392 9 H 0.096 0.904 10 C -0.248 4.248 11 N -0.584 5.584 12 Si 0.798 3.202 13 H -0.184 1.184 14 H -0.217 1.217 15 H -0.221 1.221 16 C -0.026 4.026 17 C -0.024 4.024 18 O -0.300 6.300 19 H 0.110 0.890 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.178 0.822 23 H 0.087 0.913 24 H 0.008 0.992 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.305 3.620 10.201 11.649 hybrid contribution -0.023 -0.394 -1.517 1.567 sum -4.327 3.225 8.684 10.225 Atomic orbital electron populations 1.22099 0.91957 1.03989 1.03178 1.23059 0.96515 0.91429 0.88899 1.21995 0.74859 0.92715 0.88018 1.92933 1.32275 1.97347 1.97030 1.92959 1.88318 1.81777 1.55654 1.21055 0.95328 0.84849 0.94864 1.44304 1.68659 1.05382 1.14901 1.19589 1.21408 1.12136 0.86029 0.90419 1.25886 0.98876 1.00624 0.99399 1.70206 1.31259 1.38457 1.18517 0.85166 0.78706 0.77524 0.78822 1.18425 1.21667 1.22072 1.21862 0.97150 0.96573 0.87036 1.23215 0.99481 0.80857 0.98848 1.87759 1.73303 1.27259 1.41642 0.89021 0.91976 0.91161 0.82243 0.91308 0.99167 0.94037 0.96985 0.90392 0.91561 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 7.97 71.98 0.57 -4.53 15 2 C 0.04 1.65 0.78 -10.70 -0.01 1.64 15 3 C 0.28 9.43 4.55 71.98 0.33 9.76 15 4 F -0.21 -8.40 16.64 44.97 0.75 -7.66 15 5 F -0.21 -7.62 16.47 44.97 0.74 -6.88 15 6 C 0.17 8.36 3.86 86.34 0.33 8.70 15 7 N -0.61 -30.78 2.57 -697.35 -1.79 -32.57 15 8 C -0.26 -14.22 9.65 84.03 0.81 -13.41 15 9 H 0.08 4.01 7.88 -2.91 -0.02 3.99 15 10 C -0.05 -2.95 4.95 84.86 0.42 -2.53 15 11 N -0.94 -56.95 11.14 21.65 0.24 -56.71 15 12 Si 0.97 44.68 29.59 68.60 2.03 46.71 15 13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 15 16 C 0.10 4.05 6.73 86.36 0.58 4.63 15 17 C 0.05 1.70 6.60 72.08 0.48 2.18 15 18 O -0.38 -13.81 10.17 -148.98 -1.52 -15.32 15 19 H 0.09 2.27 8.14 -2.38 -0.02 2.25 15 20 H 0.06 2.14 7.80 -2.39 -0.02 2.12 15 21 H 0.07 2.49 6.11 -2.39 -0.01 2.47 15 22 H 0.16 3.74 8.14 -2.39 -0.02 3.72 15 23 H 0.07 3.91 6.04 -2.39 -0.01 3.89 15 24 H -0.01 -0.56 7.61 -2.39 -0.02 -0.58 15 25 H 0.25 14.73 8.31 -92.71 -0.77 13.96 15 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 15 27 H 0.08 2.92 7.96 -2.39 -0.02 2.90 15 28 H 0.07 1.98 6.25 -2.39 -0.01 1.96 15 29 H 0.13 3.08 8.14 -2.39 -0.02 3.06 15 Total: -1.00 -66.86 243.53 5.12 -61.75 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.15 Total: 4.25 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 3.51 Total: 6.44 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -1.55 Total: -89.28 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.52 Total: -15.32 kcal Atomic # 9 Polarization: -16.03 SS G_CDS: 1.49 Total: -14.54 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -66.86 5.12 -61.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595917706.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.193 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds