Wall clock time and date at job start Mon Mar 30 2020 03:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.51631 * 2 1 4 4 F 1.39898 * 109.46999 * 59.89863 * 3 2 1 5 5 F 1.39899 * 109.47207 * 179.89630 * 3 2 1 6 6 C 1.53298 * 109.55319 * 120.13037 * 2 1 3 7 7 N 1.47151 * 108.38467 * 67.64133 * 6 2 1 8 8 C 1.36933 * 120.98034 * 230.55553 * 7 6 2 9 9 H 1.08004 * 119.99835 * 153.30360 * 8 7 6 10 10 C 1.38817 * 120.00467 * 333.30764 * 8 7 6 11 11 N 1.31619 * 119.99654 * 343.55139 * 10 8 7 12 12 Si 1.86796 * 120.00056 * 163.55185 * 10 8 7 13 13 H 1.48496 * 109.47112 * 94.83196 * 12 10 8 14 14 H 1.48498 * 109.47020 * 214.83071 * 12 10 8 15 15 H 1.48497 * 109.47184 * 334.83052 * 12 10 8 16 16 C 1.47151 * 118.03597 * 50.53995 * 7 6 2 17 17 C 1.53294 * 108.38487 * 309.46342 * 16 7 6 18 18 O 1.42962 * 109.51384 * 239.89474 * 2 1 3 19 19 H 1.08992 * 109.47515 * 180.10103 * 1 2 3 20 20 H 1.09001 * 109.46790 * 300.10850 * 1 2 3 21 21 H 1.09006 * 109.46828 * 60.10082 * 1 2 3 22 22 H 1.09001 * 109.47347 * 299.89451 * 3 2 1 23 23 H 1.09000 * 109.68350 * 187.37184 * 6 2 1 24 24 H 1.09003 * 109.67500 * 307.88148 * 6 2 1 25 25 H 0.97002 * 120.00107 * 179.97438 * 11 10 8 26 26 H 1.08998 * 109.68306 * 189.73649 * 16 7 6 27 27 H 1.09005 * 109.67737 * 69.18539 * 16 7 6 28 28 H 1.08993 * 109.51453 * 172.22607 * 17 16 7 29 29 H 1.08999 * 109.50743 * 292.33075 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 9 1.5734 2.1026 1.1411 5 9 3.4401 1.4410 0.0024 6 6 2.0430 -0.7251 1.2494 7 7 1.6978 -2.1508 1.1332 8 6 1.0636 -2.8079 2.1535 9 1 0.4447 -3.6670 1.9402 10 6 1.2158 -2.3699 3.4619 11 7 2.1982 -1.5504 3.7713 12 14 0.0266 -2.9435 4.7832 13 1 0.5955 -4.1233 5.4829 14 1 -0.1939 -1.8473 5.7604 15 1 -1.2673 -3.3159 4.1568 16 6 2.0540 -2.8494 -0.1120 17 6 1.5405 -2.0209 -1.2951 18 8 2.0075 -0.6759 -1.1657 19 1 -0.3634 -1.0276 0.0018 20 1 -0.3633 0.5155 0.8890 21 1 -0.3633 0.5123 -0.8909 22 1 1.6797 1.9557 -0.8909 23 1 3.1251 -0.6139 1.3201 24 1 1.5720 -0.3040 2.1376 25 1 2.3045 -1.2440 4.6855 26 1 1.5897 -3.8355 -0.1254 27 1 3.1371 -2.9521 -0.1784 28 1 1.9121 -2.4473 -2.2268 29 1 0.4505 -2.0297 -1.2998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595917707.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:22 Heat of formation + Delta-G solvation = -122.112327 kcal Electronic energy + Delta-G solvation = -16486.318133 eV Core-core repulsion = 13467.158645 eV Total energy + Delta-G solvation = -3019.159489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.46276 -46.44812 -38.87127 -34.52665 -32.36982 -31.27844 -28.02325 -26.12887 -25.66829 -23.23719 -21.52796 -18.83244 -17.49974 -16.82449 -16.68375 -16.08874 -15.34582 -14.56237 -14.14784 -13.92798 -13.59942 -13.29677 -13.03917 -12.82895 -12.70162 -12.32141 -11.71179 -11.60078 -11.17962 -10.92094 -10.75830 -10.63537 -10.34682 -10.28235 -9.89939 -9.57528 -9.11762 -8.55037 -6.75787 -5.84594 -3.29425 3.33905 3.41188 3.43042 3.77997 4.38862 4.47673 4.74324 4.99329 5.34677 5.41141 5.44466 5.63029 5.75471 5.88119 5.90515 6.08299 6.18626 6.37198 6.52244 6.67339 6.78485 7.05198 7.46185 7.68161 7.74789 8.32098 9.09065 9.72612 10.29934 11.23554 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.030885 B = 0.012206 C = 0.010266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.372540 B = 2293.445062 C = 2726.681595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.039 3.961 3 C 0.283 3.717 4 F -0.197 7.197 5 F -0.199 7.199 6 C 0.157 3.843 7 N -0.590 5.590 8 C -0.259 4.259 9 H 0.069 0.931 10 C 0.004 3.996 11 N -0.899 5.899 12 Si 0.904 3.096 13 H -0.287 1.287 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.107 3.893 17 C 0.048 3.952 18 O -0.378 6.378 19 H 0.082 0.918 20 H 0.070 0.930 21 H 0.049 0.951 22 H 0.104 0.896 23 H 0.035 0.965 24 H 0.101 0.899 25 H 0.256 0.744 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 3.595 -8.412 9.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 C 0.229 3.771 4 F -0.178 7.178 5 F -0.181 7.181 6 C 0.031 3.969 7 N -0.314 5.314 8 C -0.388 4.388 9 H 0.087 0.913 10 C -0.195 4.195 11 N -0.543 5.543 12 Si 0.733 3.267 13 H -0.213 1.213 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.019 4.019 17 C -0.030 4.030 18 O -0.298 6.298 19 H 0.101 0.899 20 H 0.089 0.911 21 H 0.068 0.932 22 H 0.122 0.878 23 H 0.053 0.947 24 H 0.119 0.881 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.729 3.741 -8.330 9.530 hybrid contribution -0.565 -0.364 1.004 1.208 sum -3.294 3.377 -7.326 8.713 Atomic orbital electron populations 1.22175 0.94051 1.04283 1.01554 1.23228 0.95012 0.90789 0.91307 1.21522 0.75675 0.93386 0.86526 1.92975 1.88329 1.81830 1.54653 1.92962 1.30827 1.97338 1.96926 1.21349 0.98246 0.84135 0.93185 1.43993 1.68642 1.04790 1.13950 1.19153 1.21669 1.12680 0.85279 0.91305 1.25088 0.97238 0.99932 0.97218 1.70016 1.29145 1.36557 1.18578 0.86262 0.80869 0.77906 0.81640 1.21341 1.21402 1.20344 1.21621 0.97732 0.95266 0.87265 1.23103 0.98515 0.82280 0.99090 1.87748 1.72939 1.26500 1.42593 0.89949 0.91111 0.93178 0.87823 0.94694 0.88075 0.93346 0.91743 0.95462 0.89630 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.97 37.16 0.30 -2.61 15 2 C 0.04 0.77 0.78 -90.47 -0.07 0.70 15 3 C 0.28 5.07 4.55 37.16 0.17 5.24 15 4 F -0.20 -3.71 16.47 2.25 0.04 -3.67 15 5 F -0.20 -3.96 16.64 2.25 0.04 -3.92 15 6 C 0.16 3.88 3.85 -3.53 -0.01 3.87 15 7 N -0.59 -14.86 2.57 -171.82 -0.44 -15.30 15 8 C -0.26 -7.01 9.65 -15.06 -0.15 -7.15 15 9 H 0.07 1.81 7.88 -52.48 -0.41 1.39 15 10 C 0.00 0.12 4.95 -17.43 -0.09 0.04 15 11 N -0.90 -26.33 11.14 55.49 0.62 -25.71 15 12 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 15 13 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 16 C 0.11 2.26 6.73 -3.53 -0.02 2.23 15 17 C 0.05 0.85 6.60 37.31 0.25 1.09 15 18 O -0.38 -7.39 10.17 -35.23 -0.36 -7.75 15 19 H 0.08 1.57 6.12 -51.93 -0.32 1.25 15 20 H 0.07 1.28 7.80 -51.93 -0.41 0.87 15 21 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 23 H 0.04 0.96 7.61 -51.93 -0.40 0.56 15 24 H 0.10 2.76 6.06 -51.93 -0.31 2.45 15 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 26 H 0.06 1.26 7.96 -51.93 -0.41 0.85 15 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 28 H 0.09 1.25 8.14 -51.93 -0.42 0.82 15 29 H 0.05 0.86 6.26 -51.93 -0.32 0.54 15 LS Contribution 243.55 15.07 3.67 3.67 Total: -1.00 -30.10 243.55 -4.50 -34.61 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.41 Total: -1.80 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 0.37 Total: 3.41 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.18 Total: -41.01 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.36 Total: -7.75 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.07 Total: -7.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.10 -4.50 -34.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595917707.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.505 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds