Wall clock time and date at job start Mon Mar 30 2020 03:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.51631 * 2 1 4 4 F 1.39898 * 109.46999 * 59.89863 * 3 2 1 5 5 F 1.39899 * 109.47207 * 179.89630 * 3 2 1 6 6 C 1.53298 * 109.55319 * 120.13037 * 2 1 3 7 7 N 1.47151 * 108.38467 * 67.64133 * 6 2 1 8 8 C 1.36933 * 120.98034 * 230.55553 * 7 6 2 9 9 H 1.08004 * 119.99835 * 153.30360 * 8 7 6 10 10 C 1.38817 * 120.00467 * 333.30764 * 8 7 6 11 11 N 1.31619 * 119.99654 * 343.55139 * 10 8 7 12 12 Si 1.86796 * 120.00056 * 163.55185 * 10 8 7 13 13 H 1.48496 * 109.47112 * 94.83196 * 12 10 8 14 14 H 1.48498 * 109.47020 * 214.83071 * 12 10 8 15 15 H 1.48497 * 109.47184 * 334.83052 * 12 10 8 16 16 C 1.47151 * 118.03597 * 50.53995 * 7 6 2 17 17 C 1.53294 * 108.38487 * 309.46342 * 16 7 6 18 18 O 1.42962 * 109.51384 * 239.89474 * 2 1 3 19 19 H 1.08992 * 109.47515 * 180.10103 * 1 2 3 20 20 H 1.09001 * 109.46790 * 300.10850 * 1 2 3 21 21 H 1.09006 * 109.46828 * 60.10082 * 1 2 3 22 22 H 1.09001 * 109.47347 * 299.89451 * 3 2 1 23 23 H 1.09000 * 109.68350 * 187.37184 * 6 2 1 24 24 H 1.09003 * 109.67500 * 307.88148 * 6 2 1 25 25 H 0.97002 * 120.00107 * 179.97438 * 11 10 8 26 26 H 1.08998 * 109.68306 * 189.73649 * 16 7 6 27 27 H 1.09005 * 109.67737 * 69.18539 * 16 7 6 28 28 H 1.08993 * 109.51453 * 172.22607 * 17 16 7 29 29 H 1.08999 * 109.50743 * 292.33075 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 9 1.5734 2.1026 1.1411 5 9 3.4401 1.4410 0.0024 6 6 2.0430 -0.7251 1.2494 7 7 1.6978 -2.1508 1.1332 8 6 1.0636 -2.8079 2.1535 9 1 0.4447 -3.6670 1.9402 10 6 1.2158 -2.3699 3.4619 11 7 2.1982 -1.5504 3.7713 12 14 0.0266 -2.9435 4.7832 13 1 0.5955 -4.1233 5.4829 14 1 -0.1939 -1.8473 5.7604 15 1 -1.2673 -3.3159 4.1568 16 6 2.0540 -2.8494 -0.1120 17 6 1.5405 -2.0209 -1.2951 18 8 2.0075 -0.6759 -1.1657 19 1 -0.3634 -1.0276 0.0018 20 1 -0.3633 0.5155 0.8890 21 1 -0.3633 0.5123 -0.8909 22 1 1.6797 1.9557 -0.8909 23 1 3.1251 -0.6139 1.3201 24 1 1.5720 -0.3040 2.1376 25 1 2.3045 -1.2440 4.6855 26 1 1.5897 -3.8355 -0.1254 27 1 3.1371 -2.9521 -0.1784 28 1 1.9121 -2.4473 -2.2268 29 1 0.4505 -2.0297 -1.2998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595917707.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:22 Heat of formation + Delta-G solvation = -142.000234 kcal Electronic energy + Delta-G solvation = -16487.180538 eV Core-core repulsion = 13467.158645 eV Total energy + Delta-G solvation = -3020.021893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.93329 -47.93749 -40.48436 -36.40584 -33.92826 -33.25171 -29.67542 -27.92180 -27.26239 -25.03727 -23.21021 -20.49057 -19.23287 -18.32401 -18.25907 -17.76017 -17.03953 -16.36901 -15.83907 -15.59717 -15.28411 -14.87727 -14.72126 -14.48024 -14.32259 -13.87280 -13.21703 -13.13820 -12.95190 -12.77453 -12.51739 -12.37374 -12.17091 -12.06341 -11.70492 -11.11895 -10.84340 -10.57069 -8.77157 -7.92665 -5.41281 1.44795 1.46479 1.56656 2.31295 2.45982 3.06925 3.19326 3.26459 3.51132 3.78720 3.93375 4.12150 4.24603 4.42270 4.45001 4.61986 4.69279 4.86631 4.96169 5.01259 5.13861 5.29581 5.46066 5.58014 6.15650 6.27930 7.02125 7.71555 8.26215 9.13602 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.030885 B = 0.012206 C = 0.010266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.372540 B = 2293.445062 C = 2726.681595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.043 3.957 3 C 0.278 3.722 4 F -0.206 7.206 5 F -0.215 7.215 6 C 0.166 3.834 7 N -0.608 5.608 8 C -0.264 4.264 9 H 0.078 0.922 10 C -0.052 4.052 11 N -0.938 5.938 12 Si 0.971 3.029 13 H -0.286 1.286 14 H -0.294 1.294 15 H -0.263 1.263 16 C 0.099 3.901 17 C 0.053 3.947 18 O -0.380 6.380 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.091 0.909 22 H 0.161 0.839 23 H -0.010 1.010 24 H 0.068 0.932 25 H 0.251 0.749 26 H 0.078 0.922 27 H 0.012 0.988 28 H 0.126 0.874 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 3.527 -10.180 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.001 3.999 3 C 0.224 3.776 4 F -0.187 7.187 5 F -0.196 7.196 6 C 0.040 3.960 7 N -0.332 5.332 8 C -0.393 4.393 9 H 0.095 0.905 10 C -0.247 4.247 11 N -0.584 5.584 12 Si 0.798 3.202 13 H -0.213 1.213 14 H -0.220 1.220 15 H -0.187 1.187 16 C -0.026 4.026 17 C -0.024 4.024 18 O -0.300 6.300 19 H 0.088 0.912 20 H 0.081 0.919 21 H 0.110 0.890 22 H 0.178 0.822 23 H 0.008 0.992 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.030 0.970 28 H 0.144 0.856 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.326 3.657 -10.134 11.610 hybrid contribution -0.014 -0.416 1.511 1.567 sum -4.340 3.241 -8.623 10.184 Atomic orbital electron populations 1.22098 0.91956 1.03974 1.03186 1.23065 0.96516 0.91429 0.88912 1.21996 0.74861 0.92726 0.88009 1.92959 1.88316 1.81799 1.55626 1.92933 1.32284 1.97348 1.97028 1.21032 0.95313 0.84854 0.94825 1.44270 1.68684 1.05357 1.14905 1.19554 1.21247 1.12556 0.85976 0.90472 1.25903 0.98813 1.00562 0.99467 1.70202 1.31210 1.38465 1.18536 0.85214 0.79269 0.76983 0.78730 1.21268 1.22028 1.18722 1.21863 0.97136 0.96571 0.87042 1.23210 0.99482 0.80853 0.98848 1.87760 1.73340 1.27243 1.41625 0.91192 0.91948 0.89026 0.82250 0.99186 0.91354 0.94031 0.90391 0.96996 0.85649 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 7.97 71.98 0.57 -4.53 15 2 C 0.04 1.64 0.78 -10.70 -0.01 1.63 15 3 C 0.28 9.43 4.55 71.98 0.33 9.76 15 4 F -0.21 -7.61 16.47 44.97 0.74 -6.87 15 5 F -0.21 -8.41 16.64 44.97 0.75 -7.66 15 6 C 0.17 8.40 3.85 86.36 0.33 8.74 15 7 N -0.61 -30.79 2.57 -697.53 -1.79 -32.58 15 8 C -0.26 -14.33 9.65 84.04 0.81 -13.52 15 9 H 0.08 3.98 7.88 -2.91 -0.02 3.96 15 10 C -0.05 -2.92 4.95 84.86 0.42 -2.50 15 11 N -0.94 -56.95 11.14 21.65 0.24 -56.71 15 12 Si 0.97 44.65 29.58 68.60 2.03 46.68 15 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 14 H -0.29 -13.67 7.11 99.48 0.71 -12.96 15 15 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 16 C 0.10 4.06 6.73 86.35 0.58 4.64 15 17 C 0.05 1.71 6.60 72.08 0.48 2.18 15 18 O -0.38 -13.83 10.17 -148.98 -1.52 -15.34 15 19 H 0.07 2.48 6.12 -2.39 -0.01 2.47 15 20 H 0.06 2.15 7.80 -2.39 -0.02 2.13 15 21 H 0.09 2.27 8.14 -2.38 -0.02 2.25 15 22 H 0.16 3.74 8.14 -2.39 -0.02 3.72 15 23 H -0.01 -0.57 7.61 -2.39 -0.02 -0.59 15 24 H 0.07 3.88 6.06 -2.39 -0.01 3.87 15 25 H 0.25 14.76 8.31 -92.71 -0.77 13.99 15 26 H 0.08 2.92 7.96 -2.39 -0.02 2.91 15 27 H 0.01 0.52 8.14 -2.38 -0.02 0.51 15 28 H 0.13 3.08 8.14 -2.39 -0.02 3.06 15 29 H 0.07 1.98 6.26 -2.39 -0.01 1.96 15 Total: -1.00 -66.85 243.55 5.12 -61.74 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.15 Total: 4.35 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 3.51 Total: 6.41 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -1.55 Total: -89.29 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.52 Total: -15.34 kcal Atomic # 9 Polarization: -16.02 SS G_CDS: 1.49 Total: -14.54 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -66.85 5.12 -61.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595917707.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.265 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds