Wall clock time and date at job start Mon Mar 30 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46813 * 2 1 4 4 C 1.50704 * 109.46562 * 240.00455 * 2 1 3 5 5 H 1.07990 * 119.99888 * 245.69841 * 4 2 1 6 6 C 1.37878 * 120.00063 * 65.70165 * 4 2 1 7 7 N 1.31518 * 120.00160 * 197.20710 * 6 4 2 8 8 Si 1.86797 * 120.00097 * 17.47654 * 6 4 2 9 9 H 1.48497 * 109.47546 * 179.72541 * 8 6 4 10 10 H 1.48502 * 109.47531 * 299.72655 * 8 6 4 11 11 H 1.48508 * 109.47163 * 59.72952 * 8 6 4 12 12 C 1.50694 * 109.47197 * 120.00881 * 2 1 3 13 13 O 1.21287 * 120.00243 * 119.99866 * 12 2 1 14 14 N 1.34776 * 119.99583 * 299.99347 * 12 2 1 15 15 C 1.39982 * 119.99964 * 185.25536 * 14 12 2 16 16 C 1.39231 * 120.86944 * 211.64816 * 15 14 12 17 17 N 1.32269 * 119.01268 * 179.76237 * 16 15 14 18 18 C 1.31791 * 120.89514 * 0.51774 * 17 16 15 19 19 N 1.31797 * 121.92119 * 359.73023 * 18 17 16 20 20 C 1.32266 * 120.89085 * 359.97438 * 19 18 17 21 21 H 1.08993 * 109.47073 * 175.93365 * 1 2 3 22 22 H 1.09005 * 109.46387 * 295.92668 * 1 2 3 23 23 H 1.08993 * 109.47272 * 55.92431 * 1 2 3 24 24 H 0.97002 * 119.99500 * 355.21837 * 7 6 4 25 25 H 0.97005 * 120.00536 * 5.25084 * 14 12 2 26 26 H 1.08007 * 120.49276 * 359.97438 * 16 15 14 27 27 H 1.07995 * 119.03692 * 179.75293 * 18 17 16 28 28 H 1.08004 * 120.48498 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5751 -1.6389 -1.1343 6 6 1.7988 -0.1746 -2.4794 7 7 1.9229 -0.9266 -3.5512 8 14 1.3134 1.6211 -2.6495 9 1 1.1275 1.9498 -4.0857 10 1 0.0437 1.8622 -1.9182 11 1 2.3834 2.4792 -2.0799 12 6 2.0324 -0.7106 1.2303 13 8 2.7297 -1.6967 1.1189 14 7 1.7069 -0.2501 2.4544 15 6 2.2615 -0.8423 3.5952 16 6 1.5483 -0.8977 4.7897 17 7 2.1059 -1.4700 5.8438 18 6 3.3219 -1.9736 5.7762 19 7 4.0310 -1.9363 4.6659 20 6 3.5426 -1.3865 3.5665 21 1 -0.3633 -1.0250 -0.0729 22 1 -0.3632 0.4494 0.9243 23 1 -0.3633 0.5757 -0.8511 24 1 2.2455 -1.8378 -3.4697 25 1 1.0884 0.4916 2.5451 26 1 0.5532 -0.4827 4.8537 27 1 3.7497 -2.4305 6.6563 28 1 4.1292 -1.3599 2.6600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597515720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:41 Heat of formation + Delta-G solvation = 10.397513 kcal Electronic energy + Delta-G solvation = -14495.609370 eV Core-core repulsion = 11932.885125 eV Total energy + Delta-G solvation = -2562.724245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15335 -39.21745 -34.97125 -34.05773 -33.61020 -31.52063 -29.86241 -25.01644 -24.76330 -24.38229 -22.26766 -19.84454 -17.88964 -17.64070 -17.42456 -16.95555 -15.92906 -14.93305 -14.36878 -14.02638 -13.64413 -13.56011 -13.44454 -12.87380 -12.10044 -11.77407 -11.47630 -11.37075 -10.83944 -10.78921 -10.66884 -10.27436 -9.91374 -9.34861 -9.03687 -8.98608 -8.35257 -8.27412 -6.56928 -4.16587 0.90984 1.09180 3.12907 3.21809 3.25130 3.32403 3.50057 3.86770 4.19674 4.30996 4.38270 4.54488 4.91616 5.16326 5.26208 5.63566 5.86388 6.02840 6.15520 6.17628 6.33628 6.62623 6.71902 7.00900 7.06934 7.44098 7.88433 8.10184 8.35629 8.63689 8.90575 9.53467 10.85433 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.057868 B = 0.006925 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.746206 B = 4042.541462 C = 4291.828347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.007 3.993 3 H 0.051 0.949 4 C -0.596 4.596 5 H 0.076 0.924 6 C 0.032 3.968 7 N -0.900 5.900 8 Si 1.043 2.957 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.527 3.473 13 O -0.510 6.510 14 N -0.679 5.679 15 C 0.066 3.934 16 C 0.108 3.892 17 N -0.503 5.503 18 C 0.254 3.746 19 N -0.499 5.499 20 C 0.140 3.860 21 H 0.053 0.947 22 H 0.027 0.973 23 H 0.068 0.932 24 H 0.271 0.729 25 H 0.412 0.588 26 H 0.168 0.832 27 H 0.194 0.806 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 4.635 14.289 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 H 0.069 0.931 4 C -0.634 4.634 5 H 0.094 0.906 6 C -0.174 4.174 7 N -0.533 5.533 8 Si 0.871 3.129 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.209 1.209 12 C 0.317 3.683 13 O -0.382 6.382 14 N -0.326 5.326 15 C -0.035 4.035 16 C -0.061 4.061 17 N -0.216 5.216 18 C -0.034 4.034 19 N -0.213 5.213 20 C -0.029 4.029 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.248 0.752 26 H 0.185 0.815 27 H 0.210 0.790 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.935 4.640 13.778 14.667 hybrid contribution -0.248 -0.478 0.451 0.702 sum -2.184 4.162 14.229 14.985 Atomic orbital electron populations 1.22278 0.96638 1.01973 0.99982 1.19247 0.93988 0.96995 0.91297 0.93097 1.21908 1.41029 1.10917 0.89527 0.90613 1.25769 0.94693 1.05010 0.91934 1.70832 1.41074 1.10129 1.31282 0.84087 0.76889 0.75323 0.76563 1.20858 1.19920 1.20854 1.21964 0.78746 0.84017 0.83556 1.90594 1.36443 1.25179 1.85952 1.44091 1.48017 1.36321 1.04159 1.19772 0.94688 0.99262 0.89804 1.23034 0.99319 0.95957 0.87766 1.68293 1.12911 1.09826 1.30558 1.24794 0.87505 0.95202 0.95926 1.68434 1.37560 1.15627 0.99663 1.23509 0.91112 0.91302 0.96968 0.92766 0.95443 0.91331 0.91899 0.75156 0.81515 0.78966 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.80 37.16 0.33 -2.51 15 2 C 0.01 0.14 2.23 -92.92 -0.21 -0.06 15 3 H 0.05 1.03 6.79 -51.93 -0.35 0.68 15 4 C -0.60 -16.27 8.63 -34.44 -0.30 -16.57 15 5 H 0.08 2.36 7.02 -52.49 -0.37 1.99 15 6 C 0.03 0.88 5.35 -17.82 -0.10 0.78 15 7 N -0.90 -26.99 13.70 55.43 0.76 -26.23 15 8 Si 1.04 23.14 26.41 -169.99 -4.49 18.65 15 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 10 H -0.27 -5.32 5.51 56.52 0.31 -5.01 15 11 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 12 C 0.53 10.65 6.93 -10.99 -0.08 10.58 15 13 O -0.51 -12.23 13.13 5.55 0.07 -12.16 15 14 N -0.68 -10.21 5.28 -9.68 -0.05 -10.26 15 15 C 0.07 0.99 6.35 -83.40 -0.53 0.46 15 16 C 0.11 1.38 11.26 -16.99 -0.19 1.19 15 17 N -0.50 -6.76 10.43 -14.43 -0.15 -6.91 15 18 C 0.25 3.37 12.28 -92.16 -1.13 2.24 15 19 N -0.50 -7.81 10.43 -14.44 -0.15 -7.96 15 20 C 0.14 2.34 9.94 -17.00 -0.17 2.17 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.03 0.39 7.34 -51.93 -0.38 0.00 15 23 H 0.07 1.33 4.79 -51.93 -0.25 1.08 15 24 H 0.27 8.22 8.73 -40.82 -0.36 7.86 15 25 H 0.41 4.67 8.04 -40.82 -0.33 4.34 15 26 H 0.17 1.55 8.06 -52.48 -0.42 1.12 15 27 H 0.19 1.83 8.06 -52.49 -0.42 1.41 15 28 H 0.18 3.25 6.43 -52.48 -0.34 2.92 15 LS Contribution 244.25 15.07 3.68 3.68 Total: -1.00 -32.22 244.25 -5.23 -37.45 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.53 Total: 5.48 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.37 Total: -1.74 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.41 Total: -51.36 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.49 Total: 18.65 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.22 -5.23 -37.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597515720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.845 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds