Wall clock time and date at job start Mon Mar 30 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46813 * 2 1 4 4 C 1.50704 * 109.46562 * 240.00455 * 2 1 3 5 5 H 1.07990 * 119.99888 * 245.69841 * 4 2 1 6 6 C 1.37878 * 120.00063 * 65.70165 * 4 2 1 7 7 N 1.31518 * 120.00160 * 197.20710 * 6 4 2 8 8 Si 1.86797 * 120.00097 * 17.47654 * 6 4 2 9 9 H 1.48497 * 109.47546 * 179.72541 * 8 6 4 10 10 H 1.48502 * 109.47531 * 299.72655 * 8 6 4 11 11 H 1.48508 * 109.47163 * 59.72952 * 8 6 4 12 12 C 1.50694 * 109.47197 * 120.00881 * 2 1 3 13 13 O 1.21287 * 120.00243 * 119.99866 * 12 2 1 14 14 N 1.34776 * 119.99583 * 299.99347 * 12 2 1 15 15 C 1.39982 * 119.99964 * 185.25536 * 14 12 2 16 16 C 1.39231 * 120.86944 * 211.64816 * 15 14 12 17 17 N 1.32269 * 119.01268 * 179.76237 * 16 15 14 18 18 C 1.31791 * 120.89514 * 0.51774 * 17 16 15 19 19 N 1.31797 * 121.92119 * 359.73023 * 18 17 16 20 20 C 1.32266 * 120.89085 * 359.97438 * 19 18 17 21 21 H 1.08993 * 109.47073 * 175.93365 * 1 2 3 22 22 H 1.09005 * 109.46387 * 295.92668 * 1 2 3 23 23 H 1.08993 * 109.47272 * 55.92431 * 1 2 3 24 24 H 0.97002 * 119.99500 * 355.21837 * 7 6 4 25 25 H 0.97005 * 120.00536 * 5.25084 * 14 12 2 26 26 H 1.08007 * 120.49276 * 359.97438 * 16 15 14 27 27 H 1.07995 * 119.03692 * 179.75293 * 18 17 16 28 28 H 1.08004 * 120.48498 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5751 -1.6389 -1.1343 6 6 1.7988 -0.1746 -2.4794 7 7 1.9229 -0.9266 -3.5512 8 14 1.3134 1.6211 -2.6495 9 1 1.1275 1.9498 -4.0857 10 1 0.0437 1.8622 -1.9182 11 1 2.3834 2.4792 -2.0799 12 6 2.0324 -0.7106 1.2303 13 8 2.7297 -1.6967 1.1189 14 7 1.7069 -0.2501 2.4544 15 6 2.2615 -0.8423 3.5952 16 6 1.5483 -0.8977 4.7897 17 7 2.1059 -1.4700 5.8438 18 6 3.3219 -1.9736 5.7762 19 7 4.0310 -1.9363 4.6659 20 6 3.5426 -1.3865 3.5665 21 1 -0.3633 -1.0250 -0.0729 22 1 -0.3632 0.4494 0.9243 23 1 -0.3633 0.5757 -0.8511 24 1 2.2455 -1.8378 -3.4697 25 1 1.0884 0.4916 2.5451 26 1 0.5532 -0.4827 4.8537 27 1 3.7497 -2.4305 6.6563 28 1 4.1292 -1.3599 2.6600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597515720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:41 Heat of formation + Delta-G solvation = -14.370353 kcal Electronic energy + Delta-G solvation = -14496.683385 eV Core-core repulsion = 11932.885125 eV Total energy + Delta-G solvation = -2563.798260 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.34663 -40.68804 -36.37671 -35.90695 -34.74951 -33.38691 -31.15285 -26.82198 -26.04245 -25.61863 -23.82007 -21.38449 -19.64479 -19.05296 -18.56943 -18.34004 -17.42456 -16.38217 -15.79983 -15.54952 -15.19473 -14.75834 -14.65917 -14.47110 -13.95697 -13.46058 -13.07888 -12.60580 -12.38115 -12.22970 -11.96540 -11.89611 -11.57577 -10.99043 -10.83079 -10.40499 -10.28065 -9.54962 -8.78634 -6.38583 -0.22447 -0.04216 1.49152 1.59304 1.63323 1.77121 1.93935 2.55246 2.74745 3.09274 3.18654 3.24437 3.43270 3.74450 4.06278 4.35676 4.43430 4.65202 4.71851 4.83051 5.00776 5.14328 5.44832 5.53193 5.77917 5.87428 6.04568 6.41478 6.59380 7.00027 7.15183 7.43734 8.62653 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.057868 B = 0.006925 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.746206 B = 4042.541462 C = 4291.828347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 H 0.079 0.921 4 C -0.603 4.603 5 H 0.015 0.985 6 C -0.024 4.024 7 N -0.938 5.938 8 Si 1.086 2.914 9 H -0.296 1.296 10 H -0.218 1.218 11 H -0.259 1.259 12 C 0.528 3.472 13 O -0.562 6.562 14 N -0.652 5.652 15 C 0.049 3.951 16 C 0.135 3.865 17 N -0.507 5.507 18 C 0.260 3.740 19 N -0.522 5.522 20 C 0.118 3.882 21 H 0.032 0.968 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.247 0.753 25 H 0.434 0.566 26 H 0.212 0.788 27 H 0.229 0.771 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 7.315 17.213 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.097 0.903 4 C -0.641 4.641 5 H 0.033 0.967 6 C -0.221 4.221 7 N -0.574 5.574 8 Si 0.905 3.095 9 H -0.223 1.223 10 H -0.141 1.141 11 H -0.184 1.184 12 C 0.318 3.682 13 O -0.438 6.438 14 N -0.301 5.301 15 C -0.052 4.052 16 C -0.035 4.035 17 N -0.220 5.220 18 C -0.027 4.027 19 N -0.236 5.236 20 C -0.049 4.049 21 H 0.051 0.949 22 H 0.105 0.895 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.275 0.725 26 H 0.229 0.771 27 H 0.245 0.755 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.178 7.333 16.781 18.784 hybrid contribution 0.520 -1.430 -0.308 1.552 sum -3.658 5.903 16.473 17.877 Atomic orbital electron populations 1.22151 0.93655 1.01371 1.03030 1.19228 0.96159 0.97411 0.89372 0.90315 1.22038 1.40121 1.09142 0.92827 0.96683 1.27551 0.93999 1.09244 0.91300 1.71000 1.44211 1.09386 1.32796 0.83653 0.79793 0.69288 0.76771 1.22269 1.14139 1.18421 1.21677 0.78206 0.83330 0.84956 1.90597 1.38847 1.27531 1.86858 1.43506 1.47601 1.36404 1.02557 1.19776 0.94431 1.00469 0.90476 1.23685 1.00255 0.93608 0.85972 1.68461 1.12870 1.10100 1.30521 1.25542 0.87341 0.93809 0.96033 1.68430 1.38531 1.16491 1.00129 1.23238 0.92254 0.92741 0.96693 0.94894 0.89548 0.91408 0.94424 0.72497 0.77140 0.75522 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.80 71.99 0.63 -4.27 15 2 C 0.00 0.01 2.23 -12.28 -0.03 -0.02 15 3 H 0.08 2.89 6.79 -2.39 -0.02 2.88 15 4 C -0.60 -34.11 8.63 25.60 0.22 -33.89 15 5 H 0.01 1.00 7.02 -2.92 -0.02 0.98 15 6 C -0.02 -1.36 5.35 84.65 0.45 -0.91 15 7 N -0.94 -59.09 13.70 21.45 0.29 -58.79 15 8 Si 1.09 44.79 26.41 68.60 1.81 46.60 15 9 H -0.30 -12.86 7.11 99.48 0.71 -12.15 15 10 H -0.22 -7.12 5.51 99.48 0.55 -6.57 15 11 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 12 C 0.53 21.06 6.93 87.66 0.61 21.67 15 13 O -0.56 -28.27 13.13 -3.05 -0.04 -28.31 15 14 N -0.65 -17.77 5.28 -302.93 -1.60 -19.36 15 15 C 0.05 1.35 6.35 38.32 0.24 1.60 15 16 C 0.13 2.86 11.26 84.87 0.96 3.81 15 17 N -0.51 -11.73 10.43 -199.58 -2.08 -13.81 15 18 C 0.26 6.23 12.28 180.88 2.22 8.45 15 19 N -0.52 -15.97 10.43 -199.59 -2.08 -18.05 15 20 C 0.12 3.97 9.94 84.87 0.84 4.81 15 21 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.09 1.92 7.34 -2.38 -0.02 1.91 15 23 H 0.07 2.32 4.79 -2.39 -0.01 2.30 15 24 H 0.25 16.20 8.73 -92.71 -0.81 15.39 15 25 H 0.43 7.62 8.04 -92.70 -0.75 6.87 15 26 H 0.21 2.55 8.06 -2.91 -0.02 2.52 15 27 H 0.23 3.56 8.06 -2.91 -0.02 3.54 15 28 H 0.15 5.82 6.43 -2.91 -0.02 5.80 15 Total: -1.00 -77.51 244.25 2.71 -74.80 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.26 Total: 15.69 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 6.15 Total: 1.24 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -5.47 Total: -110.02 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.04 Total: -28.31 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.81 Total: 46.60 kcal Total: -77.51 2.71 -74.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597515720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.429 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds